C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007YP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs847 VISTA 9606 4:41848074-42449047
GeneTranscriptPositionBiotype
ENSG00000014824 (SLC30A9)
solute carrier family 30 (zinc transporter), member 9 		ENST00000264451 (SLC30A9-001) 41990472-42090457 protein_coding
ENST00000505523 (SLC30A9-006) 42070189-42086376 retained_intron
ENST00000509683 (SLC30A9-005) 42063034-42078851 retained_intron
ENST00000510460 (SLC30A9-004) 41990527-42020775 retained_intron
ENST00000513699 (SLC30A9-002) 41990502-42086369 nonsense_mediated_decay
ENSG00000109133 (TMEM33)
transmembrane protein 33 		ENST00000264452 (TMEM33-002) 41935129-41954857 nonsense_mediated_decay
ENST00000325094 (TMEM33-201) 41935152-41960041 protein_coding
ENST00000504986 (TMEM33-001) 41935120-41960572 protein_coding
ENST00000506794 (TMEM33-008) 41935444-41949384 nonsense_mediated_decay
ENST00000508448 (TMEM33-003) 41935129-41954122 protein_coding
ENST00000510383 (TMEM33-005) 41935384-41944202 retained_intron
ENST00000513558 (TMEM33-007) 41939255-41954021 protein_coding
ENST00000513702 (TMEM33-004) 41935129-41954395 protein_coding
ENSG00000124406 (ATP8A1)
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 		ENST00000264449 (ATP8A1-003) 42408377-42657093 protein_coding
ENST00000381668 (ATP8A1-001) 42408373-42657105 protein_coding
ENST00000504024 (ATP8A1-005) 42581692-42616078 nonsense_mediated_decay
ENST00000504510 (ATP8A1-006) 42581682-42588617 retained_intron
ENST00000506602 (ATP8A1-008) 42423617-42485513 nonsense_mediated_decay
ENST00000506713 (ATP8A1-007) 42552555-42556235 retained_intron
ENST00000510289 (ATP8A1-002) 42625141-42657093 protein_coding
ENST00000511858 (ATP8A1-009) 42412975-42415147 retained_intron
ENST00000514372 (ATP8A1-004) 42408373-42507154 nonsense_mediated_decay
ENST00000515872 (ATP8A1-010) 42459358-42465075 nonsense_mediated_decay
ENSG00000178343 (SHISA3)
shisa family member 3 		ENST00000319234 (SHISA3-001) 42397839-42402487 protein_coding
ENSG00000182308 (DCAF4L1)
DDB1 and CUL4 associated factor 4-like 1 		ENST00000333141 (DCAF4L1-001) 41981696-41986467 protein_coding
ENSG00000188848 (BEND4)
BEN domain containing 4 		ENST00000502486 (BEND4-001) 42110938-42152878 protein_coding
ENST00000504360 (BEND4-002) 42110940-42152878 protein_coding
ENST00000611697 (BEND4-201) 42117440-42152183 protein_coding
ENSG00000245870 (LINC00682)
long intergenic non-protein coding RNA 682 		ENST00000498940 (LINC00682-003) 41879547-41881843 lincRNA
ENST00000499082 (LINC00682-002) 41879521-41882570 lincRNA
ENST00000504870 (LINC00682-001) 41876481-41882611 lincRNA
ENSG00000249212 (ATP1B1P1)
ATPase, Na+/K+ transporting, beta 1 polypeptide pseudogene 1 		ENST00000509767 (ATP1B1P1-001) 42029209-42030123 unprocessed_pseudogene
ENSG00000249771 (RP11-457P14.5)
 ENST00000510772 (RP11-457P14.5-001) 41883060-41894579 lincRNA
ENSG00000250781 (RP11-63A11.1)
 ENST00000503321 (RP11-63A11.1-002) 42281830-42391233 antisense
ENST00000508911 (RP11-63A11.1-003) 42299012-42391268 antisense
ENST00000515392 (RP11-63A11.1-001) 42352504-42391259 antisense
ENSG00000266058 (AC084010.1)
 ENST00000582816 (AC084010.1-201) 42445990-42446072 miRNA
ENSG00000272862 (RP11-814H16.2)
 ENST00000608029 (RP11-814H16.2-001) 41988741-41989237 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007YP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs847 VISTA 10090 5:67123705-67724669
GeneTranscriptPositionBiotype
ENSMUSG00000029221 (Slc30a9)
solute carrier family 30 (zinc transporter), member 9 		ENSMUST00000113676 (Slc30a9-002) 67306955-67355336 protein_coding
ENSMUST00000159907 (Slc30a9-004) 67315677-67318915 processed_transcript
ENSMUST00000161169 (Slc30a9-003) 67332118-67353355 retained_intron
ENSMUST00000162372 (Slc30a9-001) 67306955-67358565 protein_coding
ENSMUSG00000037685 (Atp8a1)
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 		ENSMUST00000037380 (Atp8a1-001) 67618140-67847432 protein_coding
ENSMUST00000072971 (Atp8a1-002) 67621721-67847369 protein_coding
ENSMUST00000113651 (Atp8a1-006) 67780879-67847431 protein_coding
ENSMUST00000113652 (Atp8a1-004) 67780879-67847431 protein_coding
ENSMUST00000128726 (Atp8a1-009) 67812168-67815239 retained_intron
ENSMUST00000130652 (Atp8a1-008) 67776168-67815229 processed_transcript
ENSMUST00000135930 (Atp8a1-003) 67622599-67847206 protein_coding
ENSMUST00000141443 (Atp8a1-007) 67812172-67815853 protein_coding
ENSMUST00000143013 (Atp8a1-010) 67786281-67847429 retained_intron
ENSMUST00000149501 (Atp8a1-012) 67622680-67660034 processed_transcript
ENSMUST00000152433 (Atp8a1-011) 67766635-67769117 retained_intron
ENSMUST00000155911 (Atp8a1-005) 67682142-67776759 retained_intron
ENSMUSG00000037720 (Tmem33)
transmembrane protein 33 		ENSMUST00000037918 (Tmem33-001) 67260565-67291461 protein_coding
ENSMUST00000160352 (Tmem33-005) 67260697-67288246 protein_coding
ENSMUST00000161233 (Tmem33-006) 67260696-67268568 protein_coding
ENSMUST00000161369 (Tmem33-004) 67260805-67288010 protein_coding
ENSMUST00000162074 (Tmem33-007) 67260704-67264279 nonsense_mediated_decay
ENSMUST00000162543 (Tmem33-002) 67260652-67264612 protein_coding
ENSMUST00000163028 (Tmem33-003) 67260897-67269006 retained_intron
ENSMUSG00000050010 (Shisa3)
shisa family member 3 		ENSMUST00000087241 (Shisa3-001) 67607883-67613992 protein_coding
ENSMUST00000142843 (Shisa3-002) 67607969-67623552 nonsense_mediated_decay
ENSMUSG00000085363 (Gm15478)
predicted gene 15478 		ENSMUST00000145914 (Gm15478-001) 67642401-67646776 antisense
ENSMUSG00000092060 (Bend4)
BEN domain containing 4 		ENSMUST00000169190 (Bend4-201) 67392147-67427799 protein_coding
ENSMUSG00000097840 (Gm26756)
predicted gene, 26756 		ENSMUST00000181689 (Gm26756-201) 67427680-67437990 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007YP_0001ENSG00000014824ENST00000264451ENST00000505523ENST00000513699ENSG00000109133ENST00000264452ENST00000325094ENST00000504986ENST00000508448ENST00000513702ENSG00000124406ENST00000264449ENST00000381668ENST00000506602ENST00000514372ENSG00000178343ENST00000319234ENSG00000182308ENST00000333141ENSG00000188848ENST00000502486ENST00000504360ENST00000611697ENSG00000245870ENST00000498940ENST00000499082ENST00000504870ENSG00000249212ENST00000509767ENSG00000249771ENST00000510772ENSG00000250781ENST00000503321ENST00000508911ENST00000515392ENSG00000266058ENST00000582816ENSG00000272862ENST00000608029CIL_0007YP_0002ENSMUSG00000029221ENSMUST00000113676ENSMUST00000161169ENSMUST00000162372ENSMUSG00000037685ENSMUST00000037380ENSMUST00000072971ENSMUST00000113651ENSMUST00000113652ENSMUST00000135930ENSMUST00000143013ENSMUSG00000037720ENSMUST00000037918ENSMUST00000160352ENSMUST00000161233ENSMUST00000161369ENSMUST00000162543ENSMUST00000163028ENSMUSG00000050010ENSMUST00000087241ENSMUSG00000085363ENSMUST00000145914ENSMUSG00000092060ENSMUST00000169190ENSMUSG00000097840ENSMUST00000181689
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000014824 ENST00000264451 3.381±0.00 4.250±0.00 3.126±0.00 8.762±2.37 3.597±0.16 3.810±0.33 2.648±0.00 1.352±0.21 2.917±0.00 1.939±1.40 0.814±0.00 2.269±1.62 2.484±0.34 3.020±1.09
ENST00000505523 N/A N/A 11.775±0.00 16.529±0.00 N/A N/A 3.690±0.00 3.333±0.00 4.202±0.00 N/A 3.760±0.00 4.807±2.00 12.555±0.00 11.578±0.00
ENST00000509683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513699 5.726±0.00 3.990±0.00 N/A 15.867±0.00 4.233±1.64 5.186±1.50 9.293±6.58 6.548±5.20 2.300±0.00 3.868±0.96 4.138±0.00 2.895±1.36 2.724±1.01 6.217±0.51
ENSG00000109133 ENST00000264452 N/A N/A N/A N/A N/A N/A N/A N/A 4.625±0.00 N/A N/A N/A 2.221±0.00 N/A
ENST00000325094 N/A N/A 1.887±0.00 N/A N/A 1.114±0.00 N/A N/A N/A 1.309±0.00 N/A N/A N/A N/A
ENST00000504986 2.945±0.00 1.373±0.00 N/A 5.068±1.22 1.824±0.29 1.978±0.61 1.101±0.21 3.872±0.52 3.622±1.29 2.346±1.53 1.077±0.00 2.587±1.50 2.395±1.14 0.960±0.56
ENST00000506794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508448 N/A N/A N/A N/A N/A N/A 2.742±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000510383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513702 N/A N/A N/A N/A 6.022±0.00 N/A N/A 6.826±0.00 N/A 7.347±0.00 N/A N/A 4.481±1.31 N/A
ENSG00000124406 ENST00000264449 0.749±0.00 0.898±0.00 0.843±0.00 6.658±0.69 1.626±0.83 4.948±2.68 0.505±0.12 0.562±0.00 0.353±0.32 4.562±3.11 N/A 0.876±0.28 0.233±0.00 0.587±0.16
ENST00000381668 N/A N/A N/A 15.735±5.68 N/A N/A 1.216±0.00 N/A 0.032±0.00 N/A 4.704±1.49 N/A N/A N/A
ENST00000504024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506602 N/A N/A 3.250±0.00 N/A N/A N/A N/A 1.456±0.00 N/A N/A N/A N/A N/A N/A
ENST00000506713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514372 N/A 1.268±0.00 N/A 10.320±0.00 0.593±0.00 0.679±0.00 0.525±0.00 1.163±0.00 0.214±0.00 0.471±0.00 1.393±0.00 1.805±1.20 0.247±0.13 0.466±0.00
ENST00000515872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178343 ENST00000319234 1.628±0.00 11.368±0.00 1.113±0.00 0.075±0.05 1.056±0.43 2.046±1.50 3.585±2.89 19.326±0.00 0.683±0.53 6.109±0.00 0.347±0.00 0.055±0.02 0.089±0.07 0.763±0.57
ENSG00000182308 ENST00000333141 0.138±0.00 0.090±0.00 0.075±0.00 0.135±0.01 0.049±0.01 0.047±0.02 0.078±0.00 0.155±0.08 0.010±0.00 0.051±0.00 0.132±0.00 0.055±0.03 0.017±0.01 23.386±2.40
ENSG00000188848 ENST00000502486 N/A N/A N/A N/A N/A N/A 0.001±0.00 0.001±0.00 0.001±0.00 N/A 0.001±0.00 0.002±0.00 0.007±0.00 0.845±0.00
ENST00000504360 N/A N/A N/A 0.392±0.00 0.002±0.00 0.098±0.07 0.005±0.00 0.007±0.00 0.001±0.00 0.040±0.04 0.005±0.00 0.029±0.02 0.022±0.00 1.831±1.10
ENST00000611697 N/A N/A 0.073±0.00 N/A N/A N/A 0.079±0.00 0.037±0.00 N/A N/A N/A 0.192±0.00 N/A N/A
ENSG00000245870 ENST00000498940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.01
ENST00000499082 N/A N/A N/A 0.024±0.00 N/A 0.166±0.00 N/A N/A N/A N/A N/A N/A N/A 0.032±0.00
ENST00000504870 0.045±0.00 0.157±0.00 N/A 0.038±0.00 0.108±0.00 0.212±0.00 N/A N/A 0.019±0.00 N/A 0.020±0.00 0.038±0.00 N/A 0.062±0.00
ENSG00000249212 ENST00000509767 0.053±0.00 0.096±0.00 0.442±0.00 0.130±0.10 0.780±0.00 0.499±0.40 0.298±0.24 0.546±0.44 0.794±0.00 0.672±0.59 N/A 0.195±0.20 0.048±0.01 0.062±0.05
ENSG00000249771 ENST00000510772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.05
ENSG00000250781 ENST00000503321 N/A 0.111±0.00 N/A 0.060±0.00 N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A 0.076±0.00
ENST00000508911 N/A N/A N/A N/A N/A N/A N/A 0.488±0.00 N/A N/A N/A N/A N/A 0.035±0.00
ENST00000515392 N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266058 ENST00000582816 N/A 0.387±0.00 N/A 0.414±0.00 0.407±0.00 1.826±0.00 1.446±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000272862 ENST00000608029 0.019±0.00 0.034±0.00 N/A 0.109±0.07 N/A N/A N/A 0.064±0.00 N/A N/A N/A 0.059±0.00 0.105±0.00 0.065±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029221 ENSMUST00000113676 15.014±2.90 38.061±24.24 14.013±2.00 26.830±10.66 16.943±5.99 8.614±4.62 22.896±3.77 33.981±4.05 13.476±3.33 23.921±4.93 9.048±6.08 24.491±9.92 13.644±3.12 13.261±2.69
ENSMUST00000159907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161169 N/A N/A 1.311±0.00 2.645±0.68 3.499±0.00 N/A N/A N/A 2.062±0.19 N/A N/A N/A 1.562±0.14 N/A
ENSMUST00000162372 3.770±0.50 5.276±0.38 4.685±0.42 6.845±0.71 3.568±0.57 5.441±0.82 5.436±0.86 12.206±1.02 4.206±0.99 5.038±0.81 3.043±1.10 9.404±2.63 2.900±1.27 2.272±0.82
ENSMUSG00000037685 ENSMUST00000037380 0.513±0.00 1.706±0.07 N/A 5.947±0.51 5.193±0.55 5.421±0.79 2.864±0.38 N/A 0.995±0.60 42.225±0.00 6.972±3.39 2.660±0.86 N/A N/A
ENSMUST00000072971 N/A N/A N/A N/A N/A N/A N/A 1.531±0.00 N/A N/A N/A 1.410±0.00 0.232±0.00 N/A
ENSMUST00000113651 N/A 52.775±10.91 N/A N/A N/A 20.000±2.92 N/A N/A 0.924±0.51 75.687±0.00 N/A 22.243±10.45 N/A N/A
ENSMUST00000113652 N/A 45.768±14.48 N/A N/A N/A N/A N/A N/A 1.175±0.31 N/A N/A 11.616±3.86 N/A N/A
ENSMUST00000128726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135930 N/A N/A N/A 8.289±0.00 N/A N/A N/A N/A N/A N/A N/A 1.723±0.00 0.600±0.24 N/A
ENSMUST00000141443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143013 N/A 9.858±0.00 N/A N/A 17.456±0.00 16.693±0.00 N/A N/A N/A N/A N/A 12.682±7.87 N/A N/A
ENSMUST00000149501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037720 ENSMUST00000037918 2.722±0.38 N/A 5.430±0.42 8.961±3.72 1.967±0.06 1.429±0.00 1.527±0.43 4.115±0.74 3.706±0.47 3.166±0.16 0.880±0.34 3.342±0.89 5.660±1.64 1.524±0.18
ENSMUST00000160352 5.979±0.41 62.506±7.21 6.312±1.16 7.663±0.00 18.736±10.13 13.373±6.21 3.858±1.01 23.171±0.00 6.682±1.38 8.609±2.02 1.702±0.59 26.762±8.98 9.252±2.77 4.810±2.36
ENSMUST00000161233 N/A N/A N/A N/A 47.821±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161369 5.882±0.59 22.261±4.21 6.412±1.21 3.975±1.91 5.703±0.76 7.908±1.56 2.010±0.22 13.095±2.17 13.566±5.71 4.905±0.54 0.925±0.31 7.031±2.78 10.590±4.48 1.140±0.51
ENSMUST00000162074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162543 23.746±5.03 20.071±5.42 N/A N/A 33.402±12.48 22.059±10.52 6.190±1.17 30.826±18.06 42.759±13.15 16.127±1.28 N/A 32.691±16.71 N/A 9.002±0.92
ENSMUST00000163028 23.151±2.30 22.743±0.00 N/A N/A 23.177±2.48 19.620±4.09 9.467±1.87 25.037±3.57 17.913±4.05 15.974±0.72 N/A 47.300±8.70 N/A 7.372±1.37
ENSMUSG00000050010 ENSMUST00000087241 0.948±0.00 1.571±0.19 N/A 4.976±1.22 4.943±1.03 4.294±0.78 N/A 6.945±0.64 0.131±0.02 N/A N/A 1.076±0.05 0.758±0.30 10.851±3.74
ENSMUST00000142843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085363 ENSMUST00000145914 0.187±0.13 0.115±0.00 0.045±0.00 0.277±0.13 0.658±0.26 0.162±0.08 0.027±0.02 0.145±0.04 0.049±0.02 0.330±0.14 0.105±0.06 0.182±0.15 0.024±0.01 0.039±0.02
ENSMUSG00000092060 ENSMUST00000169190 0.422±0.15 0.118±0.07 0.461±0.10 1.252±0.97 0.617±0.01 0.183±0.03 0.388±0.05 0.146±0.03 0.123±0.07 0.355±0.24 0.048±0.02 1.570±0.91 5.211±2.42 1.796±1.03
ENSMUSG00000097840 ENSMUST00000181689 N/A N/A N/A N/A 0.400±0.00 0.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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