C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002Z3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188848-ENSG00000178343 CGP 9606 4:42110938-42402487
GeneTranscriptPositionBiotype
ENSG00000178343 (SHISA3)
shisa family member 3 		ENST00000319234 (SHISA3-001) 42397839-42402487 protein_coding
ENSG00000188848 (BEND4)
BEN domain containing 4 		ENST00000502486 (BEND4-001) 42110938-42152878 protein_coding
ENST00000504360 (BEND4-002) 42110940-42152878 protein_coding
ENST00000611697 (BEND4-201) 42117440-42152183 protein_coding
ENSG00000250781 (RP11-63A11.1)
 ENST00000503321 (RP11-63A11.1-002) 42281830-42391233 antisense
ENST00000508911 (RP11-63A11.1-003) 42299012-42391268 antisense
ENST00000515392 (RP11-63A11.1-001) 42352504-42391259 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0002Z3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000092060-ENSMUSG00000050010 CGP 10090 5:67392147-67623552
GeneTranscriptPositionBiotype
ENSMUSG00000037685 (Atp8a1)
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 		ENSMUST00000037380 (Atp8a1-001) 67618140-67847432 protein_coding
ENSMUST00000072971 (Atp8a1-002) 67621721-67847369 protein_coding
ENSMUST00000113651 (Atp8a1-006) 67780879-67847431 protein_coding
ENSMUST00000113652 (Atp8a1-004) 67780879-67847431 protein_coding
ENSMUST00000128726 (Atp8a1-009) 67812168-67815239 retained_intron
ENSMUST00000130652 (Atp8a1-008) 67776168-67815229 processed_transcript
ENSMUST00000135930 (Atp8a1-003) 67622599-67847206 protein_coding
ENSMUST00000141443 (Atp8a1-007) 67812172-67815853 protein_coding
ENSMUST00000143013 (Atp8a1-010) 67786281-67847429 retained_intron
ENSMUST00000149501 (Atp8a1-012) 67622680-67660034 processed_transcript
ENSMUST00000152433 (Atp8a1-011) 67766635-67769117 retained_intron
ENSMUST00000155911 (Atp8a1-005) 67682142-67776759 retained_intron
ENSMUSG00000050010 (Shisa3)
shisa family member 3 		ENSMUST00000087241 (Shisa3-001) 67607883-67613992 protein_coding
ENSMUST00000142843 (Shisa3-002) 67607969-67623552 nonsense_mediated_decay
ENSMUSG00000092060 (Bend4)
BEN domain containing 4 		ENSMUST00000169190 (Bend4-201) 67392147-67427799 protein_coding
ENSMUSG00000097840 (Gm26756)
predicted gene, 26756 		ENSMUST00000181689 (Gm26756-201) 67427680-67437990 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Z3_0001ENSG00000178343ENST00000319234ENSG00000188848ENST00000502486ENST00000504360ENST00000611697ENSG00000250781ENST00000503321ENST00000508911ENST00000515392CIL_0002Z3_0002ENSMUSG00000037685ENSMUST00000037380ENSMUST00000072971ENSMUST00000113651ENSMUST00000113652ENSMUST00000128726ENSMUST00000130652ENSMUST00000135930ENSMUST00000141443ENSMUST00000143013ENSMUST00000149501ENSMUST00000152433ENSMUST00000155911ENSMUSG00000050010ENSMUST00000087241ENSMUST00000142843ENSMUSG00000092060ENSMUST00000169190ENSMUSG00000097840ENSMUST00000181689
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Z3_0001ENSG00000178343ENST00000319234ENSG00000188848ENST00000502486ENST00000504360ENST00000611697ENSG00000250781ENST00000503321ENST00000508911ENST00000515392CIL_0002Z3_0002ENSMUSG00000037685ENSMUST00000037380ENSMUST00000072971ENSMUST00000113651ENSMUST00000113652ENSMUST00000135930ENSMUST00000143013ENSMUSG00000050010ENSMUST00000087241ENSMUSG00000092060ENSMUST00000169190ENSMUSG00000097840ENSMUST00000181689
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000178343 ENST00000319234 1.628±0.00 11.368±0.00 1.113±0.00 0.075±0.05 1.056±0.43 2.046±1.50 3.585±2.89 19.326±0.00 0.683±0.53 6.109±0.00 0.347±0.00 0.055±0.02 0.089±0.07 0.763±0.57
ENSG00000188848 ENST00000502486 N/A N/A N/A N/A N/A N/A 0.001±0.00 0.001±0.00 0.001±0.00 N/A 0.001±0.00 0.002±0.00 0.007±0.00 0.845±0.00
ENST00000504360 N/A N/A N/A 0.392±0.00 0.002±0.00 0.098±0.07 0.005±0.00 0.007±0.00 0.001±0.00 0.040±0.04 0.005±0.00 0.029±0.02 0.022±0.00 1.831±1.10
ENST00000611697 N/A N/A 0.073±0.00 N/A N/A N/A 0.079±0.00 0.037±0.00 N/A N/A N/A 0.192±0.00 N/A N/A
ENSG00000250781 ENST00000503321 N/A 0.111±0.00 N/A 0.060±0.00 N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A 0.076±0.00
ENST00000508911 N/A N/A N/A N/A N/A N/A N/A 0.488±0.00 N/A N/A N/A N/A N/A 0.035±0.00
ENST00000515392 N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037685 ENSMUST00000037380 0.513±0.00 1.706±0.07 N/A 5.947±0.51 5.193±0.55 5.421±0.79 2.864±0.38 N/A 0.995±0.60 42.225±0.00 6.972±3.39 2.660±0.86 N/A N/A
ENSMUST00000072971 N/A N/A N/A N/A N/A N/A N/A 1.531±0.00 N/A N/A N/A 1.410±0.00 0.232±0.00 N/A
ENSMUST00000113651 N/A 52.775±10.91 N/A N/A N/A 20.000±2.92 N/A N/A 0.924±0.51 75.687±0.00 N/A 22.243±10.45 N/A N/A
ENSMUST00000113652 N/A 45.768±14.48 N/A N/A N/A N/A N/A N/A 1.175±0.31 N/A N/A 11.616±3.86 N/A N/A
ENSMUST00000128726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135930 N/A N/A N/A 8.289±0.00 N/A N/A N/A N/A N/A N/A N/A 1.723±0.00 0.600±0.24 N/A
ENSMUST00000141443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143013 N/A 9.858±0.00 N/A N/A 17.456±0.00 16.693±0.00 N/A N/A N/A N/A N/A 12.682±7.87 N/A N/A
ENSMUST00000149501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000050010 ENSMUST00000087241 0.948±0.00 1.571±0.19 N/A 4.976±1.22 4.943±1.03 4.294±0.78 N/A 6.945±0.64 0.131±0.02 N/A N/A 1.076±0.05 0.758±0.30 10.851±3.74
ENSMUST00000142843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092060 ENSMUST00000169190 0.422±0.15 0.118±0.07 0.461±0.10 1.252±0.97 0.617±0.01 0.183±0.03 0.388±0.05 0.146±0.03 0.123±0.07 0.355±0.24 0.048±0.02 1.570±0.91 5.211±2.42 1.796±1.03
ENSMUSG00000097840 ENSMUST00000181689 N/A N/A N/A N/A 0.400±0.00 0.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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