C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002Z0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178343-ENSG00000124406 CGP 9606 4:42397839-42657105
GeneTranscriptPositionBiotype
ENSG00000124406 (ATP8A1)
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 		ENST00000264449 (ATP8A1-003) 42408377-42657093 protein_coding
ENST00000381668 (ATP8A1-001) 42408373-42657105 protein_coding
ENST00000504024 (ATP8A1-005) 42581692-42616078 nonsense_mediated_decay
ENST00000504510 (ATP8A1-006) 42581682-42588617 retained_intron
ENST00000506602 (ATP8A1-008) 42423617-42485513 nonsense_mediated_decay
ENST00000506713 (ATP8A1-007) 42552555-42556235 retained_intron
ENST00000510289 (ATP8A1-002) 42625141-42657093 protein_coding
ENST00000511858 (ATP8A1-009) 42412975-42415147 retained_intron
ENST00000514372 (ATP8A1-004) 42408373-42507154 nonsense_mediated_decay
ENST00000515872 (ATP8A1-010) 42459358-42465075 nonsense_mediated_decay
ENSG00000178343 (SHISA3)
shisa family member 3 		ENST00000319234 (SHISA3-001) 42397839-42402487 protein_coding
ENSG00000240167 (RPS7P7)
ribosomal protein S7 pseudogene 7 		ENST00000463499 (RPS7P7-001) 42471810-42472380 processed_pseudogene
ENSG00000248283 (CCNL2P1)
cyclin L2 pseudogene 1 		ENST00000512846 (CCNL2P1-001) 42561457-42562425 processed_pseudogene
ENSG00000266058 (AC084010.1)
 ENST00000582816 (AC084010.1-201) 42445990-42446072 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002Z0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050010-ENSMUSG00000037685 CGP 10090 5:67607883-67847432
GeneTranscriptPositionBiotype
ENSMUSG00000037685 (Atp8a1)
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 		ENSMUST00000037380 (Atp8a1-001) 67618140-67847432 protein_coding
ENSMUST00000072971 (Atp8a1-002) 67621721-67847369 protein_coding
ENSMUST00000113651 (Atp8a1-006) 67780879-67847431 protein_coding
ENSMUST00000113652 (Atp8a1-004) 67780879-67847431 protein_coding
ENSMUST00000128726 (Atp8a1-009) 67812168-67815239 retained_intron
ENSMUST00000130652 (Atp8a1-008) 67776168-67815229 processed_transcript
ENSMUST00000135930 (Atp8a1-003) 67622599-67847206 protein_coding
ENSMUST00000141443 (Atp8a1-007) 67812172-67815853 protein_coding
ENSMUST00000143013 (Atp8a1-010) 67786281-67847429 retained_intron
ENSMUST00000149501 (Atp8a1-012) 67622680-67660034 processed_transcript
ENSMUST00000152433 (Atp8a1-011) 67766635-67769117 retained_intron
ENSMUST00000155911 (Atp8a1-005) 67682142-67776759 retained_intron
ENSMUSG00000050010 (Shisa3)
shisa family member 3 		ENSMUST00000087241 (Shisa3-001) 67607883-67613992 protein_coding
ENSMUST00000142843 (Shisa3-002) 67607969-67623552 nonsense_mediated_decay
ENSMUSG00000085363 (Gm15478)
predicted gene 15478 		ENSMUST00000145914 (Gm15478-001) 67642401-67646776 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Z0_0001ENSG00000124406ENST00000264449ENST00000381668ENST00000504024ENST00000504510ENST00000506602ENST00000506713ENST00000510289ENST00000511858ENST00000514372ENST00000515872ENSG00000178343ENST00000319234ENSG00000240167ENST00000463499ENSG00000248283ENST00000512846ENSG00000266058ENST00000582816CIL_0002Z0_0002ENSMUSG00000037685ENSMUST00000037380ENSMUST00000072971ENSMUST00000113651ENSMUST00000113652ENSMUST00000128726ENSMUST00000130652ENSMUST00000135930ENSMUST00000141443ENSMUST00000143013ENSMUST00000149501ENSMUST00000152433ENSMUST00000155911ENSMUSG00000050010ENSMUST00000087241ENSMUST00000142843ENSMUSG00000085363ENSMUST00000145914
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Z0_0001ENSG00000124406ENST00000264449ENST00000381668ENST00000506602ENST00000514372ENSG00000178343ENST00000319234ENSG00000240167ENST00000463499ENSG00000248283ENST00000512846ENSG00000266058ENST00000582816CIL_0002Z0_0002ENSMUSG00000037685ENSMUST00000037380ENSMUST00000072971ENSMUST00000113651ENSMUST00000113652ENSMUST00000135930ENSMUST00000143013ENSMUSG00000050010ENSMUST00000087241ENSMUSG00000085363ENSMUST00000145914
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124406 ENST00000264449 0.749±0.00 0.898±0.00 0.843±0.00 6.658±0.69 1.626±0.83 4.948±2.68 0.505±0.12 0.562±0.00 0.353±0.32 4.562±3.11 N/A 0.876±0.28 0.233±0.00 0.587±0.16
ENST00000381668 N/A N/A N/A 15.735±5.68 N/A N/A 1.216±0.00 N/A 0.032±0.00 N/A 4.704±1.49 N/A N/A N/A
ENST00000504024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506602 N/A N/A 3.250±0.00 N/A N/A N/A N/A 1.456±0.00 N/A N/A N/A N/A N/A N/A
ENST00000506713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514372 N/A 1.268±0.00 N/A 10.320±0.00 0.593±0.00 0.679±0.00 0.525±0.00 1.163±0.00 0.214±0.00 0.471±0.00 1.393±0.00 1.805±1.20 0.247±0.13 0.466±0.00
ENST00000515872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178343 ENST00000319234 1.628±0.00 11.368±0.00 1.113±0.00 0.075±0.05 1.056±0.43 2.046±1.50 3.585±2.89 19.326±0.00 0.683±0.53 6.109±0.00 0.347±0.00 0.055±0.02 0.089±0.07 0.763±0.57
ENSG00000240167 ENST00000463499 N/A 0.024±0.00 N/A 0.081±0.06 N/A 0.045±0.00 N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A
ENSG00000248283 ENST00000512846 0.056±0.00 0.089±0.00 0.791±0.00 0.880±0.82 1.265±0.00 1.175±0.00 0.653±0.00 0.315±0.00 0.217±0.00 1.889±0.00 2.151±0.00 0.266±0.00 N/A 0.055±0.00
ENSG00000266058 ENST00000582816 N/A 0.387±0.00 N/A 0.414±0.00 0.407±0.00 1.826±0.00 1.446±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037685 ENSMUST00000037380 0.513±0.00 1.706±0.07 N/A 5.947±0.51 5.193±0.55 5.421±0.79 2.864±0.38 N/A 0.995±0.60 42.225±0.00 6.972±3.39 2.660±0.86 N/A N/A
ENSMUST00000072971 N/A N/A N/A N/A N/A N/A N/A 1.531±0.00 N/A N/A N/A 1.410±0.00 0.232±0.00 N/A
ENSMUST00000113651 N/A 52.775±10.91 N/A N/A N/A 20.000±2.92 N/A N/A 0.924±0.51 75.687±0.00 N/A 22.243±10.45 N/A N/A
ENSMUST00000113652 N/A 45.768±14.48 N/A N/A N/A N/A N/A N/A 1.175±0.31 N/A N/A 11.616±3.86 N/A N/A
ENSMUST00000128726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135930 N/A N/A N/A 8.289±0.00 N/A N/A N/A N/A N/A N/A N/A 1.723±0.00 0.600±0.24 N/A
ENSMUST00000141443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143013 N/A 9.858±0.00 N/A N/A 17.456±0.00 16.693±0.00 N/A N/A N/A N/A N/A 12.682±7.87 N/A N/A
ENSMUST00000149501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000050010 ENSMUST00000087241 0.948±0.00 1.571±0.19 N/A 4.976±1.22 4.943±1.03 4.294±0.78 N/A 6.945±0.64 0.131±0.02 N/A N/A 1.076±0.05 0.758±0.30 10.851±3.74
ENSMUST00000142843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085363 ENSMUST00000145914 0.187±0.13 0.115±0.00 0.045±0.00 0.277±0.13 0.658±0.26 0.162±0.08 0.027±0.02 0.145±0.04 0.049±0.02 0.330±0.14 0.105±0.06 0.182±0.15 0.024±0.01 0.039±0.02

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