C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 78, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050592 Fam78a 10090 - 2:32050055-32084857 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056406 Fam78a-001 32066867-32083783 protein_coding
  ENSMUST00000130178 Fam78a-003 32069420-32079352 processed_transcript
  ENSMUST00000139629 Fam78a-004 32050055-32084669 nonsense_mediated_decay
  ENSMUST00000143795 Fam78a-002 32083272-32084857 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056406
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056406 1.506±0.00 8.998±4.74 2.136±0.00 7.177±1.35 2.082±0.15 6.080±3.09 3.726±0.33 4.579±1.57 7.863±2.11 4.530±0.51 27.052±10.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0002 VISTA 2:31827730-32428586
CIL_0006IL CIL_0006IL_0002 CGP 2:31950260-32053975
CIL_0002EO CIL_0002EO_0003 CGP 2:31974436-32084857
CIL_0002VI CIL_0002VI_0003 CGP 2:32050055-32110820

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059536 fam78aa family with sequence similarity 78, member Aa protein_coding Danio_rerio
ENSDARG00000088222 fam78ab family with sequence similarity 78, member Ab protein_coding Danio_rerio
ENSG00000126882 FAM78A family with sequence similarity 78, member A protein_coding Homo_sapiens

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