C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin synthase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090246 Sgms2-001 ENSMUSG00000050931 10090 - 3:131318985-131344933 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000090246
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000090246 3.127±0.00 0.741±0.30 0.137±0.00 2.411±0.72 5.816±2.37 0.442±0.12 12.900±0.51 3.442±2.92 1.974±0.17 0.160±0.01 5.366±2.45 5.079±1.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097H CIL_00097H_0002 VISTA 3:130836337-131437858
CIL_0000FH CIL_0000FH_0002 CGP 3:131290491-131344940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 ISA Golgi apparatus
GO:0005887 ISS integral component of plasma membrane
GO:0006686 ISS sphingomyelin biosynthetic process
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0030173 ISS integral component of Golgi membrane
GO:0033188 IEA sphingomyelin synthase activity
GO:0045203 IEA integral component of cell outer membrane
GO:0047493 ISS ceramide cholinephosphotransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359079 SGMS2-002 protein_coding Homo_sapiens 0 1327
ENST00000394684 SGMS2-001 protein_coding Homo_sapiens 0 1327
ENST00000394686 SGMS2-003 protein_coding Homo_sapiens 0 1327
ENST00000503385 SGMS2-010 protein_coding Homo_sapiens 5.99756e-43 178
ENST00000506993 SGMS2-009 protein_coding Homo_sapiens 1e-34 150

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