C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: adhesion molecule with Ig like domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050947 Amigo1 10090 + 3:108186335-108192286 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050909 Amigo1-201 108186335-108191776 protein_coding
  ENSMUST00000106656 Amigo1-001 108186358-108192286 protein_coding
  ENSMUST00000106659 Amigo1-003 108186350-108191777 protein_coding
  ENSMUST00000106661 Amigo1-002 108186373-108189005 protein_coding
  ENSMUST00000155782 Amigo1-004 108188101-108191767 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050909ENSMUST00000106656ENSMUST00000106659ENSMUST00000106661
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050909 2.214±0.75 5.300±0.43 2.967±0.38 5.668±2.88 2.948±0.18 3.738±0.72 2.405±0.95 2.794±0.69 0.960±0.63 3.149±1.20 9.296±0.66 4.642±1.20 0.515±0.17 0.208±0.12
ENSMUST00000106656 N/A N/A 0.582±0.00 2.304±0.00 0.600±0.00 N/A N/A N/A 0.163±0.10 N/A 1.404±0.02 N/A 0.097±0.01 N/A
ENSMUST00000106659 1.712±0.26 12.715±3.69 N/A N/A 5.834±1.55 5.509±1.04 2.159±0.00 3.327±0.52 1.724±1.07 4.117±1.31 N/A 7.815±1.69 0.714±0.00 0.388±0.12
ENSMUST00000106661 1.588±0.54 3.209±0.69 N/A 1.659±0.00 1.626±0.26 2.448±0.34 1.169±0.00 1.940±0.42 0.609±0.28 2.338±0.68 N/A 3.076±1.01 0.393±0.06 0.197±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007155 ISO cell adhesion
GO:0007156 ISS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 ISS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007409 ISO axonogenesis
GO:0007413 ISS axonal fasciculation
GO:0016021 ISO integral component of membrane
GO:0042552 ISS myelination
GO:0050772 ISS positive regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079620 amigo1 adhesion molecule with Ig-like domain 1 protein_coding Danio_rerio
ENSG00000181754 AMIGO1 adhesion molecule with Ig-like domain 1 protein_coding Homo_sapiens

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