C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adhesion molecule with Ig like domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050909 Amigo1-201 ENSMUSG00000050947 10090 + 3:108186335-108191776 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050909 2.214±0.75 5.300±0.43 2.967±0.38 5.668±2.88 2.948±0.18 3.738±0.72 2.405±0.95 2.794±0.69 0.960±0.63 3.149±1.20 9.296±0.66 4.642±1.20 0.515±0.17 0.208±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007155 ISO cell adhesion
GO:0007156 ISS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 ISS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007409 ISO axonogenesis
GO:0007413 ISS axonal fasciculation
GO:0016021 ISO integral component of membrane
GO:0042552 ISS myelination
GO:0050772 ISS positive regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369862 AMIGO1-002 protein_coding Homo_sapiens 0 1971
ENST00000369864 AMIGO1-001 protein_coding Homo_sapiens 0 2455

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