C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: copine VIII
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052560 Cpne8 10090 - 15:90487482-90679432 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000014777 Cpne8-002 90643326-90679388 protein_coding
  ENSMUST00000064391 Cpne8-001 90487483-90679432 protein_coding
  ENSMUST00000088649 Cpne8-003 90487482-90679371 nonsense_mediated_decay
  ENSMUST00000140171 Cpne8-005 90643329-90649438 processed_transcript
  ENSMUST00000154569 Cpne8-004 90648233-90679376 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014777ENSMUST00000064391ENSMUST00000088649ENSMUST00000140171ENSMUST00000154569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014777 9.873±2.72 2.150±0.96 10.244±1.14 3.684±0.51 6.969±1.72 8.214±1.78 3.171±0.38 4.645±1.18 1.942±0.47 6.995±1.72 1.401±0.52 3.888±2.06 5.274±2.14 1.396±0.82
ENSMUST00000064391 1.571±0.94 0.634±0.09 2.477±0.19 1.544±0.40 1.331±0.20 1.434±0.71 0.940±0.30 0.921±0.33 0.263±0.12 2.274±0.74 0.395±0.14 1.534±0.41 0.512±0.16 0.399±0.29
ENSMUST00000088649 2.917±1.35 1.232±0.16 1.309±0.15 N/A 3.699±1.41 2.570±0.89 0.799±0.00 1.068±0.41 0.288±0.12 4.968±1.23 0.231±0.12 1.419±0.43 N/A 0.731±0.35
ENSMUST00000140171 9.407±4.52 1.929±0.26 N/A N/A 6.353±1.20 8.791±0.00 N/A 7.253±2.47 1.767±0.67 5.487±0.00 1.500±0.18 4.943±3.41 2.456±0.31 1.714±0.13
ENSMUST00000154569 N/A 4.472±1.11 N/A N/A N/A 10.895±2.58 N/A N/A N/A N/A N/A 7.708±2.70 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00017A CIL_00017A_0002 CGP 15:90224311-90679432
CIL_0006HL CIL_0006HL_0002 CGP 15:90487482-91049948

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025189 cpne8 copine VIII protein_coding Danio_rerio
ENSDARG00000037926 copine VIII protein_coding Danio_rerio
ENSG00000139117 CPNE8 copine VIII protein_coding Homo_sapiens

Loading