C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trinucleotide repeat containing 6a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052707 Tnrc6a 10090 + 7:123123885-123195288 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094053 Tnrc6a-201 123123885-123195288 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094053 8.524±1.85 12.328±3.45 13.060±0.32 10.553±5.44 15.221±2.22 10.082±3.54 1.762±0.52 6.934±3.23 6.623±1.68 12.547±1.54 3.047±0.72 12.566±4.94 9.758±2.00 2.040±0.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V8 CIL_0003V8_0003 CGP 7:122965686-123195288
CIL_0005KT CIL_0005KT_0002 CGP 7:123123885-123273253

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0009267 IDA cellular response to starvation
GO:0032507 ISS maintenance of protein location in cell
GO:0032947 ISS protein complex scaffold
GO:0035068 IEA micro-ribonucleoprotein complex
GO:0035278 IEA negative regulation of translation involved in gene silencing by miRNA
GO:0044822 IEA poly(A) RNA binding
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079688 TNRC6A trinucleotide repeat containing 6A protein_coding Danio_rerio
ENSG00000090905 TNRC6A trinucleotide repeat containing 6A protein_coding Homo_sapiens

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