C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094053 Tnrc6a-201 ENSMUSG00000052707 10090 + 7:123123885-123195288 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094053 8.524±1.85 12.328±3.45 13.060±0.32 10.553±5.44 15.221±2.22 10.082±3.54 1.762±0.52 6.934±3.23 6.623±1.68 12.547±1.54 3.047±0.72 12.566±4.94 9.758±2.00 2.040±0.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V8 CIL_0003V8_0003 CGP 7:122965686-123195288
CIL_0005KT CIL_0005KT_0002 CGP 7:123123885-123273253

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0009267 IDA cellular response to starvation
GO:0032507 ISS maintenance of protein location in cell
GO:0032947 ISS protein complex scaffold
GO:0035068 IEA micro-ribonucleoprotein complex
GO:0035278 IEA negative regulation of translation involved in gene silencing by miRNA
GO:0044822 IEA poly(A) RNA binding
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113219 TNRC6A-201 protein_coding Danio_rerio 0 821
ENST00000315183 TNRC6A-003 protein_coding Homo_sapiens 0 11010
ENST00000395799 TNRC6A-001 protein_coding Homo_sapiens 0 5611
ENST00000450465 TNRC6A-004 protein_coding Homo_sapiens 0 4874
ENST00000462400 TNRC6A-006 retained_intron Homo_sapiens 0 1356
ENST00000464539 TNRC6A-007 retained_intron Homo_sapiens 0 1936
ENST00000477487 TNRC6A-005 retained_intron Homo_sapiens 0 1118
ENST00000491718 TNRC6A-002 nonsense_mediated_decay Homo_sapiens 0 5382
ENST00000561726 TNRC6A-017 retained_intron Homo_sapiens 0 444
ENST00000562829 TNRC6A-019 processed_transcript Homo_sapiens 0 287
ENST00000563201 TNRC6A-014 retained_intron Homo_sapiens 0 390
ENST00000567232 TNRC6A-018 retained_intron Homo_sapiens 0 619
ENST00000568750 TNRC6A-015 protein_coding Homo_sapiens 0 466
ENST00000568903 TNRC6A-010 retained_intron Homo_sapiens 0 691
ENST00000569098 TNRC6A-011 protein_coding Homo_sapiens 0 736
ENST00000569376 TNRC6A-013 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000569634 TNRC6A-012 retained_intron Homo_sapiens 0 573

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