C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003V8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000037919-ENSDARG00000079688 CGP 7955 3:35491691-35618661
GeneTranscriptPositionBiotype
ENSDARG00000079688 (TNRC6A)
trinucleotide repeat containing 6A 		ENSDART00000113219 (TNRC6A-201) 35597099-35618661 protein_coding
CIL_0003V8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122257-ENSG00000090905 CGP 9606 16:24537693-24827632
GeneTranscriptPositionBiotype
ENSG00000090905 (TNRC6A)
trinucleotide repeat containing 6A 		ENST00000315183 (TNRC6A-003) 24729695-24826221 protein_coding
ENST00000395799 (TNRC6A-001) 24729713-24826227 protein_coding
ENST00000450465 (TNRC6A-004) 24791487-24824786 protein_coding
ENST00000462400 (TNRC6A-006) 24804334-24816328 retained_intron
ENST00000464539 (TNRC6A-007) 24821790-24824786 retained_intron
ENST00000477487 (TNRC6A-005) 24803922-24816347 retained_intron
ENST00000491718 (TNRC6A-002) 24777248-24826227 nonsense_mediated_decay
ENST00000561726 (TNRC6A-017) 24795644-24804290 retained_intron
ENST00000562829 (TNRC6A-019) 24729713-24777027 processed_transcript
ENST00000563201 (TNRC6A-014) 24806669-24809509 retained_intron
ENST00000567232 (TNRC6A-018) 24793350-24797503 retained_intron
ENST00000568750 (TNRC6A-015) 24804700-24806754 protein_coding
ENST00000568806 (TNRC6A-016) 24797486-24798127 retained_intron
ENST00000568903 (TNRC6A-010) 24791690-24796368 retained_intron
ENST00000569098 (TNRC6A-011) 24818679-24827632 protein_coding
ENST00000569376 (TNRC6A-013) 24806719-24820180 nonsense_mediated_decay
ENST00000569634 (TNRC6A-012) 24816585-24820210 retained_intron
ENSG00000122257 (RBBP6)
retinoblastoma binding protein 6 		ENST00000319715 (RBBP6-001) 24540195-24572863 protein_coding
ENST00000348022 (RBBP6-002) 24540583-24572863 protein_coding
ENST00000381039 (RBBP6-005) 24540520-24572863 protein_coding
ENST00000452655 (RBBP6-003) 24540496-24549401 protein_coding
ENST00000562430 (RBBP6-004) 24554477-24572860 retained_intron
ENST00000562683 (RBBP6-010) 24555830-24559805 protein_coding
ENST00000564314 (RBBP6-006) 24537693-24570113 protein_coding
ENST00000564726 (RBBP6-008) 24553256-24556333 retained_intron
ENST00000567686 (RBBP6-007) 24537712-24561665 protein_coding
ENST00000568015 (RBBP6-009) 24539556-24555859 protein_coding
ENST00000568316 (RBBP6-012) 24539585-24540284 retained_intron
ENST00000570185 (RBBP6-011) 24563280-24567370 retained_intron
ENST00000613729 (RBBP6-013) 24552993-24554938 processed_transcript
ENSG00000224310 (AC012317.1)
 ENST00000414816 (AC012317.1-001) 24661422-24671062 lincRNA
ENSG00000259888 (CTD-2540M10.1)
 ENST00000566108 (CTD-2540M10.1-001) 24610266-24640957 lincRNA
ENSG00000261669 (CTD-2515A14.1)
 ENST00000568895 (CTD-2515A14.1-001) 24803451-24819739 antisense
CIL_0003V8_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030779-ENSMUSG00000052707 CGP 10090 7:122965686-123195288
GeneTranscriptPositionBiotype
ENSMUSG00000030779 (Rbbp6)
retinoblastoma binding protein 6 		ENSMUST00000052135 (Rbbp6-001) 122970564-123002557 protein_coding
ENSMUST00000071590 (Rbbp6-002) 122970918-123002557 protein_coding
ENSMUST00000098062 (Rbbp6-005) 122970700-122980181 protein_coding
ENSMUST00000126053 (Rbbp6-009) 122990130-122992512 retained_intron
ENSMUST00000137860 (Rbbp6-007) 122975640-122978761 retained_intron
ENSMUST00000148880 (Rbbp6-006) 122965686-122976008 protein_coding
ENSMUST00000156738 (Rbbp6-008) 122982542-122985702 retained_intron
ENSMUSG00000052707 (Tnrc6a)
trinucleotide repeat containing 6a 		ENSMUST00000094053 (Tnrc6a-201) 123123885-123195288 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003V8_0001ENSDARG00000079688ENSDART00000113219CIL_0003V8_0002ENSG00000090905ENST00000315183ENST00000395799ENST00000450465ENST00000462400ENST00000464539ENST00000477487ENST00000491718ENST00000561726ENST00000562829ENST00000563201ENST00000567232ENST00000568750ENST00000568806ENST00000568903ENST00000569098ENST00000569376ENST00000569634ENSG00000122257ENST00000319715ENST00000348022ENST00000381039ENST00000452655ENST00000562430ENST00000562683ENST00000564314ENST00000564726ENST00000567686ENST00000568015ENST00000568316ENST00000570185ENST00000613729ENSG00000224310ENST00000414816ENSG00000259888ENST00000566108ENSG00000261669ENST00000568895CIL_0003V8_0003ENSMUSG00000030779ENSMUST00000052135ENSMUST00000071590ENSMUST00000098062ENSMUST00000126053ENSMUST00000137860ENSMUST00000148880ENSMUST00000156738ENSMUSG00000052707ENSMUST00000094053
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003V8_0001ENSDARG00000079688ENSDART00000113219CIL_0003V8_0002ENSG00000090905ENST00000315183ENST00000395799ENST00000450465ENST00000462400ENST00000491718ENST00000568903ENSG00000122257ENST00000319715ENST00000348022ENST00000381039ENST00000452655ENST00000562430ENST00000564314ENST00000568015ENST00000613729ENSG00000224310ENST00000414816ENSG00000259888ENST00000566108ENSG00000261669ENST00000568895CIL_0003V8_0003ENSMUSG00000030779ENSMUST00000052135ENSMUST00000071590ENSMUST00000098062ENSMUSG00000052707ENSMUST00000094053
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000079688 ENSDART00000113219 N/A N/A N/A 9.890±5.17 N/A N/A 8.293±2.21 8.206±0.51 0.649±0.00 N/A 7.745±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000090905 ENST00000315183 4.160±0.00 6.181±0.00 N/A 2.511±1.82 5.060±0.00 1.185±0.00 2.634±0.00 2.982±0.00 1.535±0.00 1.489±0.41 2.165±0.00 5.950±0.00 1.821±1.36 3.187±0.00
ENST00000395799 N/A N/A N/A 0.890±0.00 N/A N/A N/A N/A N/A N/A 1.015±0.00 0.758±0.00 N/A N/A
ENST00000450465 N/A N/A 2.409±0.00 N/A 4.766±0.00 N/A N/A 2.956±0.00 N/A 1.740±0.52 2.595±0.00 4.347±2.10 0.799±0.18 N/A
ENST00000462400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.213±0.00 N/A N/A N/A
ENST00000464539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491718 0.855±0.00 N/A N/A 2.067±0.00 1.005±0.00 N/A 0.605±0.00 N/A N/A N/A N/A N/A N/A 1.929±0.00
ENST00000561726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568903 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.077±0.00 N/A N/A N/A N/A
ENST00000569098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000122257 ENST00000319715 3.437±0.00 3.998±0.00 0.863±0.00 2.998±0.00 0.765±0.00 1.442±0.00 2.018±1.84 1.550±1.01 1.648±0.82 0.921±0.21 1.887±0.00 2.969±1.51 2.666±0.79 9.736±4.65
ENST00000348022 N/A N/A N/A 0.449±0.00 1.314±0.02 1.838±0.64 N/A 3.963±0.00 N/A N/A 2.062±0.00 2.976±0.00 N/A 3.136±0.00
ENST00000381039 N/A N/A N/A N/A N/A N/A N/A 1.812±0.00 N/A N/A N/A 9.099±0.00 12.864±0.00 10.313±7.28
ENST00000452655 N/A N/A N/A N/A N/A N/A N/A N/A 5.821±0.00 N/A 3.002±0.00 N/A N/A N/A
ENST00000562430 N/A N/A N/A N/A 0.968±0.00 N/A 0.108±0.00 0.288±0.00 0.476±0.00 N/A N/A N/A N/A N/A
ENST00000562683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564314 N/A N/A N/A N/A N/A N/A 0.516±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000564726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568015 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.764±0.00 3.801±0.00 N/A N/A N/A
ENST00000568316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613729 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.627±0.00 N/A 3.479±0.00 1.684±0.00 N/A
ENSG00000224310 ENST00000414816 0.019±0.00 0.137±0.00 0.335±0.00 0.092±0.02 0.041±0.02 0.082±0.00 0.031±0.00 0.042±0.00 0.033±0.02 0.008±0.00 0.057±0.00 0.076±0.04 0.049±0.00 0.077±0.06
ENSG00000259888 ENST00000566108 N/A 0.553±0.00 N/A 0.600±0.30 N/A 0.180±0.00 N/A N/A N/A 0.347±0.00 N/A N/A N/A N/A
ENSG00000261669 ENST00000568895 0.588±0.00 0.846±0.00 0.501±0.00 0.454±0.12 0.815±0.03 0.233±0.11 0.471±0.17 0.184±0.00 0.098±0.08 1.072±0.62 0.023±0.00 0.562±0.48 0.162±0.06 0.736±0.44
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030779 ENSMUST00000052135 2.944±2.20 8.818±3.90 2.344±0.92 7.137±2.97 3.318±1.89 4.682±0.85 2.395±0.23 2.982±1.08 3.180±0.75 2.418±0.40 2.709±0.70 7.493±1.40 10.690±5.65 20.594±0.00
ENSMUST00000071590 2.064±1.59 N/A 2.478±0.00 5.632±1.64 1.651±0.34 2.490±0.22 0.532±0.06 1.652±0.90 2.497±1.66 2.428±0.21 0.688±0.16 6.316±1.48 9.433±5.16 N/A
ENSMUST00000098062 3.929±0.00 N/A 5.658±0.00 19.080±0.00 N/A N/A 2.612±0.88 2.371±0.26 3.306±0.16 N/A 2.272±0.19 7.639±0.00 4.842±0.00 N/A
ENSMUST00000126053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052707 ENSMUST00000094053 8.524±1.85 12.328±3.45 13.060±0.32 10.553±5.44 15.221±2.22 10.082±3.54 1.762±0.52 6.934±3.23 6.623±1.68 12.547±1.54 3.047±0.72 12.566±4.94 9.758±2.00 2.040±0.97

Loading