C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trinucleotide repeat containing 6A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000090905 TNRC6A 9606 + 16:24729695-24827632 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315183 TNRC6A-003 24729695-24826221 protein_coding
  ENST00000395799 TNRC6A-001 24729713-24826227 protein_coding
  ENST00000450465 TNRC6A-004 24791487-24824786 protein_coding
  ENST00000462400 TNRC6A-006 24804334-24816328 retained_intron
  ENST00000464539 TNRC6A-007 24821790-24824786 retained_intron
  ENST00000477487 TNRC6A-005 24803922-24816347 retained_intron
  ENST00000491718 TNRC6A-002 24777248-24826227 nonsense_mediated_decay
  ENST00000561726 TNRC6A-017 24795644-24804290 retained_intron
  ENST00000562829 TNRC6A-019 24729713-24777027 processed_transcript
  ENST00000563201 TNRC6A-014 24806669-24809509 retained_intron
  ENST00000567232 TNRC6A-018 24793350-24797503 retained_intron
  ENST00000568750 TNRC6A-015 24804700-24806754 protein_coding
  ENST00000568806 TNRC6A-016 24797486-24798127 retained_intron
  ENST00000568903 TNRC6A-010 24791690-24796368 retained_intron
  ENST00000569098 TNRC6A-011 24818679-24827632 protein_coding
  ENST00000569376 TNRC6A-013 24806719-24820180 nonsense_mediated_decay
  ENST00000569634 TNRC6A-012 24816585-24820210 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315183ENST00000395799ENST00000450465ENST00000462400ENST00000491718ENST00000568903
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315183 4.160±0.00 6.181±0.00 N/A 2.511±1.82 5.060±0.00 1.185±0.00 2.634±0.00 2.982±0.00 1.535±0.00 1.489±0.41 2.165±0.00 5.950±0.00 1.821±1.36 3.187±0.00
ENST00000395799 N/A N/A N/A 0.890±0.00 N/A N/A N/A N/A N/A N/A 1.015±0.00 0.758±0.00 N/A N/A
ENST00000450465 N/A N/A 2.409±0.00 N/A 4.766±0.00 N/A N/A 2.956±0.00 N/A 1.740±0.52 2.595±0.00 4.347±2.10 0.799±0.18 N/A
ENST00000462400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.213±0.00 N/A N/A N/A
ENST00000491718 0.855±0.00 N/A N/A 2.067±0.00 1.005±0.00 N/A 0.605±0.00 N/A N/A N/A N/A N/A N/A 1.929±0.00
ENST00000568903 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.077±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V8 CIL_0003V8_0002 CGP 16:24537693-24827632
CIL_0005KT CIL_0005KT_0001 CGP 16:24729695-24911628

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0009267 IEA cellular response to starvation
GO:0010467 TAS gene expression
GO:0035068 IDA micro-ribonucleoprotein complex
GO:0035278 IDA negative regulation of translation involved in gene silencing by miRNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079688 TNRC6A trinucleotide repeat containing 6A protein_coding Danio_rerio
ENSMUSG00000052707 Tnrc6a trinucleotide repeat containing 6a protein_coding Mus_musculus

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