C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cDNA sequence BC004004
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052712 BC004004 10090 + 17:29268788-29302881 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064709 BC004004-001 29268788-29302881 protein_coding
  ENSMUST00000120346 BC004004-002 29268843-29301521 protein_coding
  ENSMUST00000149405 BC004004-004 29274104-29301525 protein_coding
  ENSMUST00000150874 BC004004-005 29298284-29301525 processed_transcript
  ENSMUST00000156215 BC004004-003 29268951-29285167 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064709ENSMUST00000120346ENSMUST00000149405ENSMUST00000150874
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064709 8.173±1.56 3.847±0.98 5.173±0.30 2.846±0.82 5.199±0.81 3.901±0.58 8.938±0.96 9.298±0.81 4.598±1.89 4.989±0.63 6.994±0.70 3.813±0.90 2.141±0.82 1.451±0.71
ENSMUST00000120346 34.171±7.01 7.441±1.40 12.370±1.08 11.449±4.74 26.324±8.17 8.391±4.60 23.269±7.49 32.363±9.54 7.848±2.04 14.775±4.94 22.101±4.89 18.093±4.75 10.648±4.70 12.353±5.45
ENSMUST00000149405 8.576±0.49 25.921±2.91 16.442±2.41 3.723±0.00 14.026±2.70 16.105±4.26 36.620±7.73 51.510±7.88 38.358±22.55 12.040±3.03 14.408±3.91 16.232±8.86 9.584±6.24 1.744±0.80
ENSMUST00000150874 N/A N/A N/A 4.817±0.00 N/A N/A N/A N/A N/A N/A N/A 6.763±0.00 7.947±3.70 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0002 VISTA 17:29133661-29735358
CIL_0002Y6 CIL_0002Y6_0002 CGP 17:29250803-29302881
CIL_0002Y9 CIL_0002Y9_0002 CGP 17:29268788-29329413

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 ISS plasma membrane
GO:0016021 IEA integral component of membrane
GO:0042060 ISS wound healing
GO:0045787 ISS positive regulation of cell cycle
GO:0050673 ISS epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078301 C22H6orf89 chromosome 6 open reading frame 89 protein_coding Danio_rerio
ENSG00000198663 C6orf89 chromosome 6 open reading frame 89 protein_coding Homo_sapiens

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