C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053411 Cbx7 10090 - 15:79915807-79971119 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000089293 Cbx7-002 79915810-79932639 protein_coding
  ENSMUST00000109615 Cbx7-004 79918110-79932540 protein_coding
  ENSMUST00000109616 Cbx7-001 79915807-79932652 protein_coding
  ENSMUST00000128931 Cbx7-005 79918417-79971119 protein_coding
  ENSMUST00000132821 Cbx7-006 79918449-79971118 protein_coding
  ENSMUST00000146719 Cbx7-003 79918148-79933899 protein_coding
  ENSMUST00000176639 Cbx7-007 79915813-79932768 retained_intron
  ENSMUST00000177044 Cbx7-008 79918921-79932516 protein_coding
  ENSMUST00000177061 Cbx7-009 79930548-79933830 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089293ENSMUST00000109616ENSMUST00000176639
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089293 5.079±1.14 4.847±0.36 8.585±0.00 1.937±0.36 12.475±1.24 4.954±0.84 3.459±0.00 N/A N/A 9.675±0.69 2.902±0.95 N/A N/A 3.840±0.03
ENSMUST00000109616 8.155±1.82 6.155±0.84 19.144±4.56 4.056±1.88 14.151±0.03 9.643±0.00 5.029±1.00 10.376±2.16 1.709±0.38 21.448±6.26 5.327±1.56 6.678±3.12 9.350±5.18 17.580±7.75
ENSMUST00000176639 3.260±0.47 2.375±0.38 5.496±0.55 0.574±0.00 5.606±1.12 3.023±0.67 1.586±0.27 2.301±0.02 0.680±0.03 7.855±0.41 1.592±0.60 3.371±0.99 8.694±0.00 3.251±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NO CIL_0005NO_0002 CGP 15:79915807-80014808

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000792 IDA heterochromatin
GO:0003682 IDA chromatin binding
GO:0003727 IDA single-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0031519 ISS PcG protein complex
GO:0035064 IDA methylated histone binding
GO:0035102 IDA PRC1 complex
GO:0048733 IMP sebaceous gland development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038025 cbx7a chromobox homolog 7a protein_coding Danio_rerio
ENSDARG00000087181 cbx7b chromobox homolog 7b protein_coding Danio_rerio
ENSG00000100307 CBX7 chromobox homolog 7 protein_coding Homo_sapiens

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