C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109616 Cbx7-001 ENSMUSG00000053411 10090 - 15:79915807-79932652 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109616
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109616 8.155±1.82 6.155±0.84 19.144±4.56 4.056±1.88 14.151±0.03 9.643±0.00 5.029±1.00 10.376±2.16 1.709±0.38 21.448±6.26 5.327±1.56 6.678±3.12 9.350±5.18 17.580±7.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NO CIL_0005NO_0002 CGP 15:79915807-80014808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000792 IDA heterochromatin
GO:0003682 IDA chromatin binding
GO:0003727 IDA single-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0031519 ISS PcG protein complex
GO:0035064 IDA methylated histone binding
GO:0035102 IDA PRC1 complex
GO:0048733 IMP sebaceous gland development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216133 CBX7-001 protein_coding Homo_sapiens 0 529
ENST00000401405 CBX7-003 protein_coding Homo_sapiens 0 590
ENST00000434260 CBX7-005 protein_coding Homo_sapiens 0 289
ENST00000475962 CBX7-007 processed_transcript Homo_sapiens 0.0000002 60
ENST00000477827 CBX7-004 retained_intron Homo_sapiens 0 372
ENST00000482294 CBX7-002 retained_intron Homo_sapiens 0 337

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