C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005NO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100307-ENSG00000100311 CGP 9606 22:39120167-39244751
GeneTranscriptPositionBiotype
ENSG00000100307 (CBX7)
chromobox homolog 7 		ENST00000216133 (CBX7-001) 39130772-39152650 protein_coding
ENST00000401405 (CBX7-003) 39133584-39152444 protein_coding
ENST00000434260 (CBX7-005) 39134569-39152552 protein_coding
ENST00000475962 (CBX7-007) 39120167-39149832 processed_transcript
ENST00000477827 (CBX7-004) 39141120-39152540 retained_intron
ENST00000482294 (CBX7-002) 39147118-39152674 retained_intron
ENST00000490741 (CBX7-006) 39133691-39134779 retained_intron
ENSG00000100311 (PDGFB)
platelet-derived growth factor beta polypeptide 		ENST00000331163 (PDGFB-001) 39223359-39244751 protein_coding
ENST00000381551 (PDGFB-002) 39224935-39240909 protein_coding
ENST00000440375 (PDGFB-004) 39230184-39241130 protein_coding
ENST00000455790 (PDGFB-003) 39230159-39243016 protein_coding
ENSG00000227009 (FUNDC2P4)
FUN14 domain containing 2 pseudogene 4 		ENST00000441207 (FUNDC2P4-001) 39155525-39155945 processed_pseudogene
ENSG00000279833 (RP4-742C19.13)
 ENST00000624656 (RP4-742C19.13-001) 39133090-39136760 antisense
CIL_0005NO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000053411-ENSMUSG00000000489 CGP 10090 15:79915807-80014808
GeneTranscriptPositionBiotype
ENSMUSG00000000489 (Pdgfb)
platelet derived growth factor, B polypeptide 		ENSMUST00000000500 (Pdgfb-201) 79995900-80014808 protein_coding
ENSMUSG00000053411 (Cbx7)
chromobox 7 		ENSMUST00000089293 (Cbx7-002) 79915810-79932639 protein_coding
ENSMUST00000109615 (Cbx7-004) 79918110-79932540 protein_coding
ENSMUST00000109616 (Cbx7-001) 79915807-79932652 protein_coding
ENSMUST00000128931 (Cbx7-005) 79918417-79971119 protein_coding
ENSMUST00000132821 (Cbx7-006) 79918449-79971118 protein_coding
ENSMUST00000146719 (Cbx7-003) 79918148-79933899 protein_coding
ENSMUST00000176639 (Cbx7-007) 79915813-79932768 retained_intron
ENSMUST00000177044 (Cbx7-008) 79918921-79932516 protein_coding
ENSMUST00000177061 (Cbx7-009) 79930548-79933830 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005NO_0001ENSG00000100307ENST00000216133ENST00000401405ENST00000434260ENST00000475962ENST00000477827ENST00000482294ENST00000490741ENSG00000100311ENST00000331163ENST00000381551ENST00000440375ENST00000455790ENSG00000227009ENST00000441207ENSG00000279833ENST00000624656CIL_0005NO_0002ENSMUSG00000000489ENSMUST00000000500ENSMUSG00000053411ENSMUST00000089293ENSMUST00000109615ENSMUST00000109616ENSMUST00000128931ENSMUST00000132821ENSMUST00000146719ENSMUST00000176639ENSMUST00000177044ENSMUST00000177061
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005NO_0001ENSG00000100307ENST00000216133ENST00000401405ENSG00000100311ENST00000331163ENST00000381551ENST00000440375ENST00000455790ENSG00000227009ENST00000441207ENSG00000279833ENST00000624656CIL_0005NO_0002ENSMUSG00000000489ENSMUST00000000500ENSMUSG00000053411ENSMUST00000089293ENSMUST00000109616ENSMUST00000176639
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100307 ENST00000216133 N/A N/A N/A 25.627±0.00 1.683±0.70 N/A N/A 1.187±0.00 N/A N/A N/A 3.261±2.04 0.676±0.00 N/A
ENST00000401405 N/A N/A N/A N/A 2.388±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100311 ENST00000331163 2.976±0.00 4.214±0.00 0.156±0.00 2.583±0.00 1.258±0.73 2.497±2.36 2.256±1.15 1.790±1.66 0.514±0.26 8.946±8.00 1.065±0.36 1.914±0.61 16.918±3.52 0.835±0.59
ENST00000381551 N/A 4.181±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.683±0.00 N/A N/A N/A
ENST00000440375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.951±0.00
ENST00000455790 N/A N/A N/A N/A N/A 0.629±0.00 2.169±0.00 1.124±0.00 N/A N/A N/A 3.242±0.00 23.144±0.00 N/A
ENSG00000227009 ENST00000441207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.201±0.00 N/A 0.291±0.01
ENSG00000279833 ENST00000624656 8.216±0.00 10.756±0.00 0.912±0.00 7.757±6.81 6.783±0.00 8.165±7.69 7.594±0.00 5.126±0.00 1.508±0.01 4.346±3.37 0.803±0.00 6.409±5.28 1.332±0.28 7.030±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000489 ENSMUST00000000500 21.170±7.59 25.894±2.50 3.615±0.31 4.622±0.65 10.318±5.59 5.778±1.01 10.223±5.54 8.150±3.00 0.691±0.33 36.994±11.30 6.411±1.90 10.631±4.58 13.533±13.98 0.577±0.32
ENSMUSG00000053411 ENSMUST00000089293 5.079±1.14 4.847±0.36 8.585±0.00 1.937±0.36 12.475±1.24 4.954±0.84 3.459±0.00 N/A N/A 9.675±0.69 2.902±0.95 N/A N/A 3.840±0.03
ENSMUST00000109615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109616 8.155±1.82 6.155±0.84 19.144±4.56 4.056±1.88 14.151±0.03 9.643±0.00 5.029±1.00 10.376±2.16 1.709±0.38 21.448±6.26 5.327±1.56 6.678±3.12 9.350±5.18 17.580±7.75
ENSMUST00000128931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176639 3.260±0.47 2.375±0.38 5.496±0.55 0.574±0.00 5.606±1.12 3.023±0.67 1.586±0.27 2.301±0.02 0.680±0.03 7.855±0.41 1.592±0.60 3.371±0.99 8.694±0.00 3.251±0.71
ENSMUST00000177044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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