C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small cell adhesion glycoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053559 Smagp 10090 - 15:100621342-100636865 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066068 Smagp-201 100621342-100636855 protein_coding
  ENSMUST00000172334 Smagp-202 100621342-100636865 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066068ENSMUST00000172334
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066068 7.841±1.12 12.306±2.71 13.206±1.14 0.305±0.04 14.222±2.47 192.704±25.38 3.151±0.80 20.878±1.61 7.072±5.23 30.585±4.44 0.798±0.55 9.295±2.95 9.545±1.97 0.767±0.25
ENSMUST00000172334 11.579±3.41 6.519±1.07 20.173±3.11 0.952±0.01 8.981±1.83 N/A 4.374±0.75 35.861±5.06 10.421±5.04 14.382±1.38 1.182±0.23 6.117±3.21 37.076±15.87 0.907±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MV CIL_0003MV_0002 CGP 15:100615628-100636865
CIL_0003K2 CIL_0003K2_0002 CGP 15:100621342-100669553

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000170545 SMAGP small cell adhesion glycoprotein protein_coding Homo_sapiens

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