C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small cell adhesion glycoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066068 Smagp-201 ENSMUSG00000053559 10090 - 15:100621342-100636855 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066068
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066068 7.841±1.12 12.306±2.71 13.206±1.14 0.305±0.04 14.222±2.47 192.704±25.38 3.151±0.80 20.878±1.61 7.072±5.23 30.585±4.44 0.798±0.55 9.295±2.95 9.545±1.97 0.767±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MV CIL_0003MV_0002 CGP 15:100615628-100636865
CIL_0003K2 CIL_0003K2_0002 CGP 15:100621342-100669553

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380103 SMAGP-007 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000398453 SMAGP-002 protein_coding Homo_sapiens 0 398
ENST00000603798 SMAGP-001 protein_coding Homo_sapiens 0 398
ENST00000603864 SMAGP-003 protein_coding Homo_sapiens 0 398
ENST00000605627 SMAGP-008 protein_coding Homo_sapiens 0 398

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