C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small cell adhesion glycoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172334 Smagp-202 ENSMUSG00000053559 10090 - 15:100621342-100636865 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172334
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172334 11.579±3.41 6.519±1.07 20.173±3.11 0.952±0.01 8.981±1.83 4.374±0.75 35.861±5.06 10.421±5.04 14.382±1.38 1.182±0.23 6.117±3.21 37.076±15.87 0.907±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MV CIL_0003MV_0002 CGP 15:100615628-100636865
CIL_0003K2 CIL_0003K2_0002 CGP 15:100621342-100669553

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380103 SMAGP-007 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000398453 SMAGP-002 protein_coding Homo_sapiens 0 398
ENST00000603798 SMAGP-001 protein_coding Homo_sapiens 0 414
ENST00000603864 SMAGP-003 protein_coding Homo_sapiens 0 398
ENST00000605627 SMAGP-008 protein_coding Homo_sapiens 0 398

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