C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin repeat containing, nuclear envelope family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054150 Syne3 10090 - 12:104929949-105009809 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067005 Syne3-201 104929949-105009809 protein_coding
  ENSMUST00000095439 Syne3-202 104929949-104998677 protein_coding
  ENSMUST00000109927 Syne3-203 104929949-104998677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000067005ENSMUST00000095439ENSMUST00000109927
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000067005 0.297±0.00 1.502±0.03 N/A 0.577±0.11 0.348±0.00 0.519±0.00 0.523±0.23 0.148±0.09 N/A
ENSMUST00000095439 N/A 0.633±0.31 2.524±0.00 0.303±0.00 N/A 0.925±0.00 0.946±0.50 N/A 0.472±0.00
ENSMUST00000109927 N/A 0.718±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0002 VISTA 12:104600832-105202741
CIL_00099M CIL_00099M_0002 VISTA 12:104639330-105240069
CIL_0008Z4 CIL_0008Z4_0002 VISTA 12:104639392-105239908
CIL_0007F2 CIL_0007F2_0002 CGP 12:104929949-105040910

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005635 ISS nuclear envelope
GO:0005640 IDA nuclear outer membrane
GO:0005783 IEA endoplasmic reticulum
GO:0007010 ISS cytoskeleton organization
GO:0008360 ISS regulation of cell shape
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034993 IDA SUN-KASH complex
GO:0051015 ISS actin filament binding
GO:0090150 ISS establishment of protein localization to membrane
GO:0090286 IEA cytoskeletal anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023237 syne3 spectrin repeat containing, nuclear envelope family member 3 protein_coding Danio_rerio
ENSG00000176438 SYNE3 spectrin repeat containing, nuclear envelope family member 3 protein_coding Homo_sapiens

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