C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095439 Syne3-202 ENSMUSG00000054150 10090 - 12:104929949-104998677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverOvaryTestisENSMUST00000095439
Transcript ID Adrenal Breast Colon Liver Ovary Testis
ENSMUST00000095439 0.633±0.31 2.524±0.00 0.303±0.00 0.925±0.00 0.946±0.50 0.472±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0002 VISTA 12:104600832-105202741
CIL_00099M CIL_00099M_0002 VISTA 12:104639330-105240069
CIL_0008Z4 CIL_0008Z4_0002 VISTA 12:104639392-105239908
CIL_0007F2 CIL_0007F2_0002 CGP 12:104929949-105040910

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005635 ISS nuclear envelope
GO:0005640 IDA nuclear outer membrane
GO:0005783 IEA endoplasmic reticulum
GO:0007010 ISS cytoskeleton organization
GO:0008360 ISS regulation of cell shape
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034993 IDA SUN-KASH complex
GO:0051015 ISS actin filament binding
GO:0090150 ISS establishment of protein localization to membrane
GO:0090286 IEA cytoskeletal anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334258 SYNE3-005 protein_coding Homo_sapiens 0 2385
ENST00000553340 SYNE3-003 protein_coding Homo_sapiens 0 1609
ENST00000554873 SYNE3-004 protein_coding Homo_sapiens 0 1533
ENST00000555759 SYNE3-002 retained_intron Homo_sapiens 0 905
ENST00000557275 SYNE3-001 protein_coding Homo_sapiens 0 2364

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