C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0007F2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000176438-ENSG00000182512 CGP 9606 14:95407266-95544724
GeneTranscriptPositionBiotype
ENSG00000176438 (SYNE3)
spectrin repeat containing, nuclear envelope family member 3
ENST00000334258 (SYNE3-005) 95417494-95475836 protein_coding
ENST00000553340 (SYNE3-003) 95443661-95475836 protein_coding
ENST00000554873 (SYNE3-004) 95417604-95456189 protein_coding
ENST00000555759 (SYNE3-002) 95437802-95467856 retained_intron
ENST00000557275 (SYNE3-001) 95407266-95475836 protein_coding
ENSG00000182512 (GLRX5)
glutaredoxin 5
ENST00000331334 (GLRX5-001) 95534593-95544718 protein_coding
ENST00000553672 (GLRX5-003) 95533503-95544557 processed_transcript
ENST00000557731 (GLRX5-002) 95535274-95544724 protein_coding
ENSG00000252481 (SCARNA13)
small Cajal body-specific RNA 13
ENST00000516672 (SCARNA13-201) 95533355-95533629 snoRNA
ENSG00000258572 (RP11-1070N10.3)
ENST00000554161 (RP11-1070N10.3-001) 95516136-95517911 lincRNA
CIL_0007F2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054150-ENSMUSG00000021102 CGP 10090 12:104929949-105040910
GeneTranscriptPositionBiotype
ENSMUSG00000021102 (Glrx5)
glutaredoxin 5 homolog (S. cerevisiae)
ENSMUST00000021522 (Glrx5-201) 105032689-105040910 protein_coding
ENSMUSG00000054150 (Syne3)
spectrin repeat containing, nuclear envelope family member 3
ENSMUST00000067005 (Syne3-201) 104929949-105009809 protein_coding
ENSMUST00000095439 (Syne3-202) 104929949-104998677 protein_coding
ENSMUST00000109927 (Syne3-203) 104929949-104998677 protein_coding
ENSMUSG00000088789 (Scarna13)
small Cajal body-specific RNA 1
ENSMUST00000158164 (Scarna13-201) 105031075-105031349 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007F2_0001ENSG00000176438ENST00000334258ENST00000553340ENST00000554873ENST00000555759ENST00000557275ENSG00000182512ENST00000331334ENST00000553672ENST00000557731ENSG00000252481ENST00000516672ENSG00000258572ENST00000554161CIL_0007F2_0002ENSMUSG00000021102ENSMUST00000021522ENSMUSG00000054150ENSMUST00000067005ENSMUST00000095439ENSMUST00000109927ENSMUSG00000088789ENSMUST00000158164
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007F2_0001ENSG00000176438ENST00000334258ENST00000555759ENST00000557275ENSG00000182512ENST00000331334ENST00000553672ENSG00000252481ENST00000516672ENSG00000258572ENST00000554161CIL_0007F2_0002ENSMUSG00000021102ENSMUST00000021522ENSMUSG00000054150ENSMUST00000067005ENSMUST00000095439ENSMUST00000109927ENSMUSG00000088789ENSMUST00000158164
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000176438 ENST00000334258 5.368±0.00 N/A N/A 0.447±0.00 2.286±0.00 N/A 0.387±0.00 0.941±0.00 3.000±0.00 1.835±0.07 0.667±0.00 1.033±0.00 0.850±0.14 N/A
ENST00000553340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555759 N/A N/A N/A N/A N/A 0.429±0.00 N/A N/A 1.239±0.00 N/A N/A N/A N/A N/A
ENST00000557275 3.580±0.00 3.166±0.00 N/A 1.205±0.00 8.793±0.00 1.408±1.03 0.731±0.00 0.692±0.00 0.375±0.09 1.139±0.00 0.466±0.11 0.925±0.49 0.683±0.09 0.653±0.34
ENSG00000182512 ENST00000331334 17.155±0.00 15.290±0.00 3.670±0.00 15.122±8.38 29.109±0.00 16.300±12.72 23.359±19.23 16.633±9.51 15.283±12.20 16.059±0.00 19.342±5.71 21.321±13.31 37.934±6.53 32.233±3.03
ENST00000553672 N/A 7.242±0.00 N/A N/A 5.897±0.00 3.095±0.00 N/A 5.723±0.28 N/A 4.858±0.27 N/A 5.448±1.25 N/A 7.542±0.00
ENST00000557731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252481 ENST00000516672 N/A N/A 32.531±0.00 49.149±0.00 127.091±0.00 84.907±0.00 27.624±0.00 121.605±0.00 124.873±0.00 117.914±0.00 34.886±0.00 85.374±0.00 N/A N/A
ENSG00000258572 ENST00000554161 1.086±0.00 0.708±0.00 N/A 0.144±0.09 1.164±0.73 0.176±0.00 0.128±0.03 N/A 0.214±0.15 0.255±0.19 0.341±0.00 0.417±0.11 0.222±0.00 0.090±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021102 ENSMUST00000021522 65.232±18.98 153.921±38.24 36.864±6.95 36.834±7.71 55.826±15.38 50.859±13.03 59.777±9.51 79.259±9.31 198.071±154.86 28.907±9.05 50.147±3.82 60.728±14.04 113.826±43.46 9.262±3.03
ENSMUSG00000054150 ENSMUST00000067005 0.297±0.00 1.502±0.03 N/A N/A N/A 0.577±0.11 N/A 0.348±0.00 0.519±0.00 N/A N/A 0.523±0.23 0.148±0.09 N/A
ENSMUST00000095439 N/A 0.633±0.31 N/A N/A 2.524±0.00 0.303±0.00 N/A N/A 0.925±0.00 N/A N/A 0.946±0.50 N/A 0.472±0.00
ENSMUST00000109927 N/A 0.718±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088789 ENSMUST00000158164 18.525±10.39 11.516±1.91 4.182±0.00 9.469±6.32 8.234±2.46 6.911±2.35 6.768±1.44 9.005±2.28 5.984±3.11 9.228±1.43 0.746±0.36 21.088±12.76 2.363±1.99 6.877±3.46

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