C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) binding protein, cytoplasmic 1-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054582 Pabpc1l 10090 + 2:164025450-164050538 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067715 Pabpc1l-001 164025450-164050538 protein_coding
  ENSMUST00000126272 Pabpc1l-004 164047387-164050538 processed_transcript
  ENSMUST00000141671 Pabpc1l-002 164031171-164042320 processed_transcript
  ENSMUST00000150523 Pabpc1l-005 164048010-164050167 processed_transcript
  ENSMUST00000156087 Pabpc1l-003 164037000-164042547 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067715ENSMUST00000126272ENSMUST00000141671ENSMUST00000150523ENSMUST00000156087
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067715 0.187±0.08 0.143±0.05 0.084±0.01 0.179±0.10 0.193±0.08 0.125±0.03 0.043±0.03 0.051±0.02 0.054±0.02 0.066±0.06 0.034±0.01 1.255±0.53 0.119±0.06 1.902±1.19
ENSMUST00000126272 0.924±0.13 0.293±0.19 0.324±0.01 0.578±0.18 0.584±0.27 0.270±0.06 0.285±0.18 0.590±0.25 0.185±0.08 0.193±0.05 0.206±0.11 1.126±0.20 0.479±0.31 0.924±0.00
ENSMUST00000141671 N/A N/A N/A 0.155±0.00 N/A N/A 0.086±0.03 N/A 0.105±0.00 0.079±0.00 0.108±0.01 2.265±1.65 0.535±0.00 N/A
ENSMUST00000150523 N/A N/A N/A N/A N/A 0.776±0.00 0.308±0.00 N/A N/A N/A 0.215±0.00 N/A 1.712±0.00 N/A
ENSMUST00000156087 N/A N/A 0.339±0.00 N/A N/A 0.316±0.08 N/A N/A 0.148±0.00 0.113±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UV CIL_0003UV_0002 CGP 2:163994960-164050538
CIL_0002ZU CIL_0002ZU_0002 CGP 2:164025450-164071169

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001556 IMP oocyte maturation
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0006378 IMP mRNA polyadenylation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000101104 PABPC1L poly(A) binding protein, cytoplasmic 1-like protein_coding Homo_sapiens

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