C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) binding protein, cytoplasmic 1-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101104 PABPC1L 9606 + 20:44910062-44959035 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000217073 PABPC1L-001 44910144-44938748 protein_coding
  ENST00000217074 PABPC1L-017 44910062-44930726 protein_coding
  ENST00000217075 PABPC1L-011 44932682-44939317 protein_coding
  ENST00000255136 PABPC1L-201 44910062-44939321 protein_coding
  ENST00000372819 PABPC1L-007 44932179-44959035 protein_coding
  ENST00000372822 PABPC1L-005 44935462-44939317 protein_coding
  ENST00000372824 PABPC1L-004 44931562-44939317 protein_coding
  ENST00000372826 PABPC1L-009 44933135-44958807 protein_coding
  ENST00000465761 PABPC1L-008 44933043-44937187 processed_transcript
  ENST00000474208 PABPC1L-013 44935397-44938696 processed_transcript
  ENST00000476056 PABPC1L-016 44921625-44939317 processed_transcript
  ENST00000479873 PABPC1L-006 44932690-44939317 nonsense_mediated_decay
  ENST00000481196 PABPC1L-002 44918994-44930726 processed_transcript
  ENST00000482486 PABPC1L-015 44937843-44939317 processed_transcript
  ENST00000489068 PABPC1L-014 44935431-44939184 processed_transcript
  ENST00000490798 PABPC1L-010 44921611-44959035 processed_transcript
  ENST00000537323 PABPC1L-202 44910124-44939313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000217073ENST00000217074ENST00000372819ENST00000372824ENST00000465761ENST00000474208ENST00000479873ENST00000481196ENST00000482486ENST00000489068ENST00000490798
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000217073 N/A N/A N/A N/A 0.478±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000217074 0.342±0.00 2.175±0.00 1.386±0.00 N/A N/A 0.853±0.00 0.171±0.00 0.498±0.00 1.866±0.00 1.046±0.39 N/A 8.768±9.23 0.557±0.20 3.463±0.00
ENST00000372819 N/A 0.544±0.00 N/A N/A 0.379±0.00 0.371±0.00 N/A N/A 0.206±0.00 N/A N/A N/A 0.320±0.00 1.093±0.00
ENST00000372824 N/A 1.029±0.00 0.251±0.00 0.325±0.00 0.345±0.00 0.241±0.00 0.129±0.08 5.251±0.00 0.752±0.00 N/A N/A 13.409±10.59 0.314±0.12 2.946±0.00
ENST00000465761 N/A N/A N/A N/A 0.800±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.505±0.00 N/A N/A N/A
ENST00000479873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A 0.453±0.02 N/A
ENST00000481196 N/A N/A 0.741±0.00 N/A N/A 1.034±0.00 0.102±0.00 0.424±0.00 1.199±0.00 N/A N/A N/A N/A N/A
ENST00000482486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A N/A N/A
ENST00000489068 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.863±0.00 N/A N/A N/A N/A
ENST00000490798 N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UV CIL_0003UV_0001 CGP 20:44885676-44959035
CIL_0002ZU CIL_0002ZU_0001 CGP 20:44910062-44960486

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001556 IEA oocyte maturation
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0006378 IEA mRNA polyadenylation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000054582 Pabpc1l poly(A) binding protein, cytoplasmic 1-like protein_coding Mus_musculus

Loading