C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067715 Pabpc1l-001 ENSMUSG00000054582 10090 + 2:164025450-164050538 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067715
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067715 0.187±0.08 0.143±0.05 0.084±0.01 0.179±0.10 0.193±0.08 0.125±0.03 0.043±0.03 0.051±0.02 0.054±0.02 0.066±0.06 0.034±0.01 1.255±0.53 0.119±0.06 1.902±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UV CIL_0003UV_0002 CGP 2:163994960-164050538
CIL_0002ZU CIL_0002ZU_0002 CGP 2:164025450-164071169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001556 IMP oocyte maturation
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0006378 IMP mRNA polyadenylation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000217073 PABPC1L-001 protein_coding Homo_sapiens 0 1410
ENST00000217074 PABPC1L-017 protein_coding Homo_sapiens 0 952
ENST00000217075 PABPC1L-011 protein_coding Homo_sapiens 0 267
ENST00000255136 PABPC1L-201 protein_coding Homo_sapiens 0 1410
ENST00000372819 PABPC1L-007 protein_coding Homo_sapiens 0 268
ENST00000372822 PABPC1L-005 protein_coding Homo_sapiens 7e-27 124
ENST00000372824 PABPC1L-004 protein_coding Homo_sapiens 0 294
ENST00000372826 PABPC1L-009 protein_coding Homo_sapiens 0 265
ENST00000474208 PABPC1L-013 processed_transcript Homo_sapiens 2e-24 115
ENST00000476056 PABPC1L-016 processed_transcript Homo_sapiens 0 392
ENST00000479873 PABPC1L-006 nonsense_mediated_decay Homo_sapiens 7e-35 152
ENST00000481196 PABPC1L-002 processed_transcript Homo_sapiens 1e-38 163
ENST00000482486 PABPC1L-015 processed_transcript Homo_sapiens 7e-27 124
ENST00000489068 PABPC1L-014 processed_transcript Homo_sapiens 3e-39 165
ENST00000490798 PABPC1L-010 processed_transcript Homo_sapiens 0 416
ENST00000537323 PABPC1L-202 protein_coding Homo_sapiens 0 952

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