C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 2A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054611 Kdm2a 10090 - 19:4314419-4398285 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047898 Kdm2a-001 4314419-4398285 protein_coding
  ENSMUST00000075856 Kdm2a-201 4316170-4397077 protein_coding
  ENSMUST00000116571 Kdm2a-005 4341350-4397080 protein_coding
  ENSMUST00000175682 Kdm2a-003 4350603-4397068 retained_intron
  ENSMUST00000175777 Kdm2a-004 4348196-4397076 retained_intron
  ENSMUST00000175959 Kdm2a-007 4350186-4362887 protein_coding
  ENSMUST00000175978 Kdm2a-009 4320177-4322803 retained_intron
  ENSMUST00000176483 Kdm2a-006 4388410-4397077 protein_coding
  ENSMUST00000176495 Kdm2a-002 4392471-4397095 retained_intron
  ENSMUST00000176497 Kdm2a-011 4329191-4333919 nonsense_mediated_decay
  ENSMUST00000176532 Kdm2a-010 4319253-4322548 nonsense_mediated_decay
  ENSMUST00000176653 Kdm2a-008 4324906-4334001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047898ENSMUST00000075856ENSMUST00000175959ENSMUST00000176532ENSMUST00000176653
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047898 N/A 4.036±1.38 N/A N/A 3.819±0.12 N/A N/A N/A 1.287±0.29 N/A N/A 4.707±1.27 N/A 1.318±0.18
ENSMUST00000075856 7.787±2.56 13.619±1.71 5.399±1.19 11.117±3.62 23.082±2.19 15.994±0.62 4.892±2.07 6.954±3.08 4.169±1.88 15.080±4.47 4.564±1.23 17.846±3.18 8.342±3.05 3.642±0.58
ENSMUST00000175959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.318±0.00 32.336±0.00
ENSMUST00000176532 N/A 27.809±0.00 N/A N/A 64.812±15.82 N/A N/A N/A N/A N/A N/A 50.597±10.61 N/A N/A
ENSMUST00000176653 N/A N/A N/A 26.943±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.139±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0008270 IEA zinc ion binding
GO:0045322 IDA unmethylated CpG binding
GO:0070544 IEA histone H3-K36 demethylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059653 kdm2aa lysine (K)-specific demethylase 2Aa protein_coding Danio_rerio
ENSDARG00000078133 CT955967.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000173120 KDM2A lysine (K)-specific demethylase 2A protein_coding Homo_sapiens

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