C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 2A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047898 Kdm2a-001 ENSMUSG00000054611 10090 - 19:4314419-4398285 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverOvaryTestisENSMUST00000047898
Transcript ID Adrenal Breast Liver Ovary Testis
ENSMUST00000047898 4.036±1.38 3.819±0.12 1.287±0.29 4.707±1.27 1.318±0.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0008270 IEA zinc ion binding
GO:0045322 IDA unmethylated CpG binding
GO:0070544 IEA histone H3-K36 demethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308783 KDM2A-201 protein_coding Homo_sapiens 0 4915
ENST00000398645 KDM2A-001 protein_coding Homo_sapiens 0 3325
ENST00000517637 KDM2A-009 processed_transcript Homo_sapiens 3e-30 135
ENST00000524657 KDM2A-006 processed_transcript Homo_sapiens 0 2386
ENST00000525379 KDM2A-005 processed_transcript Homo_sapiens 0 435
ENST00000526258 KDM2A-004 processed_transcript Homo_sapiens 0 5594
ENST00000527157 KDM2A-012 processed_transcript Homo_sapiens 0 370
ENST00000528380 KDM2A-011 processed_transcript Homo_sapiens 0 333
ENST00000529006 KDM2A-002 protein_coding Homo_sapiens 0 6844
ENST00000530342 KDM2A-010 protein_coding Homo_sapiens 0 3515
ENST00000531696 KDM2A-003 processed_transcript Homo_sapiens 0 4612

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