C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 2A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173120 KDM2A 9606 + 11:67119269-67258087 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308783 KDM2A-201 67121269-67255062 protein_coding
  ENST00000398645 KDM2A-001 67119269-67257665 protein_coding
  ENST00000517637 KDM2A-009 67240301-67243816 processed_transcript
  ENST00000524657 KDM2A-006 67252338-67257670 processed_transcript
  ENST00000525041 KDM2A-013 67231765-67248379 processed_transcript
  ENST00000525379 KDM2A-005 67217543-67219688 processed_transcript
  ENST00000526258 KDM2A-004 67207602-67257661 processed_transcript
  ENST00000527157 KDM2A-012 67119976-67180453 processed_transcript
  ENST00000528380 KDM2A-011 67207568-67215673 processed_transcript
  ENST00000529006 KDM2A-002 67119687-67258087 protein_coding
  ENST00000529124 KDM2A-007 67245078-67248605 processed_transcript
  ENST00000530342 KDM2A-010 67240047-67256373 protein_coding
  ENST00000531696 KDM2A-003 67215911-67256374 processed_transcript
  ENST00000532436 KDM2A-014 67119891-67149207 processed_transcript
  ENST00000534486 KDM2A-008 67245539-67248368 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308783ENST00000398645ENST00000524657ENST00000526258ENST00000527157ENST00000529006ENST00000530342ENST00000531696
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308783 N/A N/A 2.084±0.00 N/A N/A N/A 1.013±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000398645 3.330±0.00 N/A N/A 1.369±0.00 2.312±0.00 3.840±0.00 2.029±0.00 1.662±0.00 2.312±0.00 4.047±0.00 1.627±0.14 3.183±1.26 2.226±0.00 N/A
ENST00000524657 N/A 12.085±0.00 N/A N/A N/A 3.262±0.00 N/A 3.023±0.00 3.836±0.00 N/A N/A 6.020±0.30 4.119±0.00 N/A
ENST00000526258 5.101±0.00 7.691±0.00 N/A 2.512±0.00 5.956±0.00 3.186±0.00 3.182±0.00 3.348±0.00 N/A 7.742±0.00 3.461±2.04 4.375±1.58 3.094±1.59 8.784±0.00
ENST00000527157 N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.357±0.00 N/A N/A N/A N/A
ENST00000529006 4.303±0.00 2.991±0.00 1.053±0.00 2.150±0.88 3.262±0.00 2.984±0.41 1.998±1.12 2.474±0.63 3.058±0.65 5.504±0.00 1.940±1.13 5.716±2.84 7.060±0.00 17.902±10.18
ENST00000530342 N/A N/A N/A N/A N/A N/A N/A N/A 3.049±0.00 N/A N/A N/A 2.271±0.00 N/A
ENST00000531696 N/A N/A N/A N/A N/A N/A N/A 1.713±0.00 N/A N/A 1.770±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0045322 IEA unmethylated CpG binding
GO:0051864 IEA histone demethylase activity (H3-K36 specific)
GO:0055114 IEA oxidation-reduction process
GO:0070544 IMP histone H3-K36 demethylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059653 kdm2aa lysine (K)-specific demethylase 2Aa protein_coding Danio_rerio
ENSDARG00000078133 CT955967.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000054611 Kdm2a lysine (K)-specific demethylase 2A protein_coding Mus_musculus

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