C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: contactin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055022 Cntn1 10090 + 15:92051165-92341967 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000109 Cntn1-001 92128188-92341953 protein_coding
  ENSMUST00000068378 Cntn1-002 92161357-92340114 protein_coding
  ENSMUST00000141187 Cntn1-003 92051165-92249451 retained_intron
  ENSMUST00000169825 Cntn1-201 92051165-92341967 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000109ENSMUST00000068378ENSMUST00000141187ENSMUST00000169825
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000109 0.096±0.00 0.336±0.00 N/A 1.542±0.00 0.507±0.17 0.406±0.25 0.036±0.00 0.376±0.14 0.021±0.02 N/A 0.006±0.00 0.421±0.26 0.014±0.01 N/A
ENSMUST00000068378 1.242±0.92 0.444±0.10 N/A 14.372±16.31 1.299±0.50 0.515±0.38 0.074±0.04 0.671±0.09 0.007±0.00 1.063±0.11 N/A 0.926±0.40 0.015±0.00 0.978±0.47
ENSMUST00000141187 N/A N/A N/A N/A N/A N/A 0.028±0.01 0.133±0.00 0.026±0.02 N/A 0.010±0.00 0.085±0.05 0.011±0.01 0.010±0.00
ENSMUST00000169825 0.776±0.49 0.576±0.00 0.839±0.14 11.980±8.95 0.429±0.08 0.589±0.33 N/A 0.179±0.02 N/A 0.908±0.38 0.006±0.00 0.200±0.01 0.181±0.30 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0003 CGP 15:92051165-92771819

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001948 IDA glycoprotein binding
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 IEA Notch signaling pathway
GO:0010628 IMP positive regulation of gene expression
GO:0010765 IMP positive regulation of sodium ion transport
GO:0010976 IGI positive regulation of neuron projection development
GO:0021549 IMP cerebellum development
GO:0030246 IDA carbohydrate binding
GO:0031175 IGI neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045685 cntn1b contactin 1b protein_coding Danio_rerio
ENSG00000018236 CNTN1 contactin 1 protein_coding Homo_sapiens

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