C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: contactin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000018236 CNTN1 9606 + 12:40692442-41072418 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000347616 CNTN1-201 40908354-41072406 protein_coding
  ENST00000348761 CNTN1-002 40908359-41070265 protein_coding
  ENST00000547702 CNTN1-003 40692442-40972435 protein_coding
  ENST00000547849 CNTN1-004 40828059-40972435 protein_coding
  ENST00000548005 CNTN1-008 40742351-40922283 protein_coding
  ENST00000548481 CNTN1-010 41029114-41070241 nonsense_mediated_decay
  ENST00000550305 CNTN1-009 41005039-41027918 processed_transcript
  ENST00000551295 CNTN1-001 40692552-41072418 protein_coding
  ENST00000551424 CNTN1-005 40692462-40918732 protein_coding
  ENST00000552248 CNTN1-007 40742353-40922298 protein_coding
  ENST00000552913 CNTN1-006 40828184-40918762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347616ENST00000348761ENST00000547702ENST00000547849ENST00000548481ENST00000550305ENST00000551295ENST00000551424
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347616 N/A 1.271±0.00 N/A 35.806±3.02 0.326±0.06 0.528±0.00 N/A 0.638±0.59 0.038±0.00 1.160±0.08 N/A 2.179±1.80 0.037±0.03 3.461±2.36
ENST00000348761 0.087±0.00 0.707±0.00 N/A N/A N/A 0.968±0.62 0.079±0.00 0.256±0.00 N/A 0.480±0.00 0.042±0.00 1.574±0.77 N/A N/A
ENST00000547702 N/A N/A N/A 14.948±0.00 N/A 0.283±0.00 0.021±0.00 N/A N/A 0.743±0.00 0.301±0.00 0.919±0.00 N/A N/A
ENST00000547849 N/A N/A 0.737±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548481 N/A N/A N/A N/A N/A N/A 0.251±0.00 N/A N/A N/A 0.206±0.00 N/A N/A N/A
ENST00000550305 N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A 0.590±0.00 N/A N/A N/A
ENST00000551295 N/A N/A N/A 20.640±0.00 N/A 1.177±0.00 N/A N/A 13.738±0.00 N/A 0.061±0.00 3.085±1.97 0.066±0.07 N/A
ENST00000551424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.088±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0002 CGP 12:40692442-41574590

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001948 IEA glycoprotein binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 TAS Notch signaling pathway
GO:0007411 TAS axon guidance
GO:0010628 IEA positive regulation of gene expression
GO:0010765 IEA positive regulation of sodium ion transport
GO:0010976 IEA positive regulation of neuron projection development
GO:0016020 TAS membrane
GO:0021549 IEA cerebellum development
GO:0030246 IEA carbohydrate binding
GO:0031175 IEA neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045685 cntn1b contactin 1b protein_coding Danio_rerio
ENSMUSG00000055022 Cntn1 contactin 1 protein_coding Mus_musculus

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