C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169825 Cntn1-201 ENSMUSG00000055022 10090 + 15:92051165-92341967 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLungMuscleOvaryPlacentaENSMUST00000169825
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Lung Muscle Ovary Placenta
ENSMUST00000169825 0.776±0.49 0.576±0.00 0.839±0.14 11.980±8.95 0.429±0.08 0.589±0.33 0.179±0.02 0.908±0.38 0.006±0.00 0.200±0.01 0.181±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0003 CGP 15:92051165-92771819

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001948 IDA glycoprotein binding
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 IEA Notch signaling pathway
GO:0010628 IMP positive regulation of gene expression
GO:0010765 IMP positive regulation of sodium ion transport
GO:0010976 IGI positive regulation of neuron projection development
GO:0021549 IMP cerebellum development
GO:0030246 IDA carbohydrate binding
GO:0031175 IGI neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347616 CNTN1-201 protein_coding Homo_sapiens 0 3788
ENST00000348761 CNTN1-002 protein_coding Homo_sapiens 0 3410
ENST00000547702 CNTN1-003 protein_coding Homo_sapiens 0 2058
ENST00000547849 CNTN1-004 protein_coding Homo_sapiens 0 1962
ENST00000548005 CNTN1-008 protein_coding Homo_sapiens 0 278
ENST00000551295 CNTN1-001 protein_coding Homo_sapiens 0 3808
ENST00000551424 CNTN1-005 protein_coding Homo_sapiens 0 200
ENST00000552248 CNTN1-007 protein_coding Homo_sapiens 0 283
ENST00000552913 CNTN1-006 protein_coding Homo_sapiens 0 233

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