C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003DM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000045685-ENSDARG00000045687 CGP 7955 4:12798362-12925969
GeneTranscriptPositionBiotype
ENSDARG00000045685 (cntn1b)
contactin 1b 		ENSDART00000067166 (cntn1b-201) 12798362-12821233 protein_coding
ENSDART00000133157 (cntn1b-001) 12798362-12821240 protein_coding
ENSDARG00000045687 (pdzrn4)
PDZ domain containing ring finger 4 		ENSDART00000067168 (pdzrn4-001) 12875335-12925969 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003DM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000018236-ENSG00000165966 CGP 9606 12:40692442-41574590
GeneTranscriptPositionBiotype
ENSG00000018236 (CNTN1)
contactin 1 		ENST00000347616 (CNTN1-201) 40908354-41072406 protein_coding
ENST00000348761 (CNTN1-002) 40908359-41070265 protein_coding
ENST00000547702 (CNTN1-003) 40692442-40972435 protein_coding
ENST00000547849 (CNTN1-004) 40828059-40972435 protein_coding
ENST00000548005 (CNTN1-008) 40742351-40922283 protein_coding
ENST00000548481 (CNTN1-010) 41029114-41070241 nonsense_mediated_decay
ENST00000550305 (CNTN1-009) 41005039-41027918 processed_transcript
ENST00000551295 (CNTN1-001) 40692552-41072418 protein_coding
ENST00000551424 (CNTN1-005) 40692462-40918732 protein_coding
ENST00000552248 (CNTN1-007) 40742353-40922298 protein_coding
ENST00000552913 (CNTN1-006) 40828184-40918762 protein_coding
ENSG00000165966 (PDZRN4)
PDZ domain containing ring finger 4 		ENST00000298919 (PDZRN4-003) 41437739-41574582 protein_coding
ENST00000402685 (PDZRN4-001) 41188448-41574118 protein_coding
ENST00000539469 (PDZRN4-002) 41437683-41574332 protein_coding
ENST00000548316 (PDZRN4-004) 41509551-41574590 retained_intron
ENSG00000257228 (RP11-413B19.2)
 ENST00000547168 (RP11-413B19.2-001) 41409467-41473510 antisense
ENST00000548450 (RP11-413B19.2-002) 41411525-41412477 antisense
ENSG00000257680 (RP11-367O10.1)
 ENST00000548175 (RP11-367O10.1-001) 40728811-40729897 processed_pseudogene
ENSG00000274682 (RP11-385G16.1)
 ENST00000615828 (RP11-385G16.1-001) 40978744-40979244 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0003DM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055022-ENSMUSG00000036218 CGP 10090 15:92051165-92771819
GeneTranscriptPositionBiotype
ENSMUSG00000036218 (Pdzrn4)
PDZ domain containing RING finger 4 		ENSMUST00000035399 (Pdzrn4-201) 92597109-92771819 protein_coding
ENSMUST00000169942 (Pdzrn4-202) 92396915-92771819 protein_coding
ENSMUSG00000055022 (Cntn1)
contactin 1 		ENSMUST00000000109 (Cntn1-001) 92128188-92341953 protein_coding
ENSMUST00000068378 (Cntn1-002) 92161357-92340114 protein_coding
ENSMUST00000141187 (Cntn1-003) 92051165-92249451 retained_intron
ENSMUST00000169825 (Cntn1-201) 92051165-92341967 protein_coding
ENSMUSG00000097068 (Gm26760)
predicted gene, 26760 		ENSMUST00000181901 (Gm26760-201) 92344359-92378088 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DM_0001ENSDARG00000045685ENSDART00000067166ENSDART00000133157ENSDARG00000045687ENSDART00000067168CIL_0003DM_0002ENSG00000018236ENST00000347616ENST00000348761ENST00000547702ENST00000547849ENST00000548005ENST00000548481ENST00000550305ENST00000551295ENST00000551424ENST00000552248ENST00000552913ENSG00000165966ENST00000298919ENST00000402685ENST00000539469ENST00000548316ENSG00000257228ENST00000547168ENST00000548450ENSG00000257680ENST00000548175ENSG00000274682ENST00000615828CIL_0003DM_0003ENSMUSG00000036218ENSMUST00000035399ENSMUST00000169942ENSMUSG00000055022ENSMUST00000000109ENSMUST00000068378ENSMUST00000141187ENSMUST00000169825ENSMUSG00000097068ENSMUST00000181901
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DM_0001ENSDARG00000045685ENSDART00000067166ENSDART00000133157ENSDARG00000045687ENSDART00000067168CIL_0003DM_0002ENSG00000018236ENST00000347616ENST00000348761ENST00000547702ENST00000547849ENST00000548481ENST00000550305ENST00000551295ENST00000551424ENSG00000165966ENST00000298919ENST00000402685ENST00000539469ENST00000548316ENSG00000257228ENST00000547168ENST00000548450ENSG00000257680ENST00000548175ENSG00000274682ENST00000615828CIL_0003DM_0003ENSMUSG00000036218ENSMUST00000035399ENSMUST00000169942ENSMUSG00000055022ENSMUST00000000109ENSMUST00000068378ENSMUST00000141187ENSMUST00000169825ENSMUSG00000097068ENSMUST00000181901
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000045685 ENSDART00000067166 N/A N/A N/A 37.575±4.10 N/A N/A 0.025±0.01 0.079±0.05 0.016±0.00 N/A 1.038±0.00 N/A N/A N/A
ENSDART00000133157 N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A
ENSDARG00000045687 ENSDART00000067168 N/A N/A N/A 1.859±0.22 N/A N/A 0.047±0.01 0.429±0.00 0.012±0.00 N/A 0.221±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000018236 ENST00000347616 N/A 1.271±0.00 N/A 35.806±3.02 0.326±0.06 0.528±0.00 N/A 0.638±0.59 0.038±0.00 1.160±0.08 N/A 2.179±1.80 0.037±0.03 3.461±2.36
ENST00000348761 0.087±0.00 0.707±0.00 N/A N/A N/A 0.968±0.62 0.079±0.00 0.256±0.00 N/A 0.480±0.00 0.042±0.00 1.574±0.77 N/A N/A
ENST00000547702 N/A N/A N/A 14.948±0.00 N/A 0.283±0.00 0.021±0.00 N/A N/A 0.743±0.00 0.301±0.00 0.919±0.00 N/A N/A
ENST00000547849 N/A N/A 0.737±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548481 N/A N/A N/A N/A N/A N/A 0.251±0.00 N/A N/A N/A 0.206±0.00 N/A N/A N/A
ENST00000550305 N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A 0.590±0.00 N/A N/A N/A
ENST00000551295 N/A N/A N/A 20.640±0.00 N/A 1.177±0.00 N/A N/A 13.738±0.00 N/A 0.061±0.00 3.085±1.97 0.066±0.07 N/A
ENST00000551424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.088±0.00 N/A N/A N/A
ENST00000552248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165966 ENST00000298919 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A 0.335±0.00 0.138±0.00 N/A N/A N/A
ENST00000402685 0.092±0.00 1.423±0.00 N/A 0.779±0.17 1.029±0.72 3.031±1.36 0.034±0.00 0.153±0.00 3.304±3.29 0.202±0.10 0.110±0.00 0.547±0.25 1.321±1.25 2.235±0.32
ENST00000539469 0.070±0.00 N/A N/A 0.324±0.11 N/A N/A 0.093±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000548316 0.145±0.00 0.486±0.00 0.246±0.00 0.411±0.00 0.472±0.35 2.881±1.79 0.048±0.00 0.201±0.02 0.060±0.00 0.553±0.00 0.070±0.00 0.121±0.00 1.238±0.00 1.412±0.73
ENSG00000257228 ENST00000547168 0.037±0.00 0.110±0.00 N/A 0.012±0.00 0.035±0.00 0.033±0.00 0.033±0.00 N/A N/A N/A N/A N/A 0.027±0.00 0.104±0.03
ENST00000548450 N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A 2.358±0.00 N/A N/A N/A 0.036±0.00 N/A
ENSG00000257680 ENST00000548175 N/A N/A N/A 0.585±0.54 N/A 0.386±0.00 0.022±0.00 N/A 0.789±0.00 N/A N/A 0.058±0.02 N/A 0.207±0.00
ENSG00000274682 ENST00000615828 N/A 0.109±0.00 N/A 2.107±0.00 N/A N/A N/A N/A N/A 0.405±0.00 N/A 0.176±0.02 N/A 0.083±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036218 ENSMUST00000035399 0.180±0.10 0.028±0.00 0.065±0.05 4.336±3.34 0.045±0.01 N/A N/A 0.175±0.03 0.011±0.01 N/A 0.122±0.07 0.499±0.44 0.012±0.01 0.365±0.10
ENSMUST00000169942 N/A 0.041±0.02 0.054±0.01 1.361±0.00 N/A 0.126±0.06 0.494±0.11 0.051±0.01 0.011±0.01 0.096±0.02 N/A 1.207±0.97 0.018±0.00 N/A
ENSMUSG00000055022 ENSMUST00000000109 0.096±0.00 0.336±0.00 N/A 1.542±0.00 0.507±0.17 0.406±0.25 0.036±0.00 0.376±0.14 0.021±0.02 N/A 0.006±0.00 0.421±0.26 0.014±0.01 N/A
ENSMUST00000068378 1.242±0.92 0.444±0.10 N/A 14.372±16.31 1.299±0.50 0.515±0.38 0.074±0.04 0.671±0.09 0.007±0.00 1.063±0.11 N/A 0.926±0.40 0.015±0.00 0.978±0.47
ENSMUST00000141187 N/A N/A N/A N/A N/A N/A 0.028±0.01 0.133±0.00 0.026±0.02 N/A 0.010±0.00 0.085±0.05 0.011±0.01 0.010±0.00
ENSMUST00000169825 0.776±0.49 0.576±0.00 0.839±0.14 11.980±8.95 0.429±0.08 0.589±0.33 N/A 0.179±0.02 N/A 0.908±0.38 0.006±0.00 0.200±0.01 0.181±0.30 N/A
ENSMUSG00000097068 ENSMUST00000181901 0.088±0.04 0.123±0.05 0.073±0.00 0.010±0.00 0.062±0.01 0.075±0.00 0.270±0.08 0.062±0.01 0.082±0.04 0.139±0.01 0.031±0.02 0.263±0.09 0.036±0.02 0.066±0.05

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