C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020461 Nfic-002 ENSMUSG00000055053 10090 - 10:81399138-81427173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastMusclePlacentaENSMUST00000020461
Transcript ID Breast Muscle Placenta
ENSMUST00000020461 10.488±0.00 19.880±2.59 1.713±0.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001159 IEA core promoter proximal region DNA binding
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005730 IEA nucleolus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088668 nfic-201 protein_coding Danio_rerio 0 760
ENSDART00000138604 nfic-001 protein_coding Danio_rerio 0 760
ENSDART00000121795 nfixa-201 protein_coding Danio_rerio 0 536
ENSDART00000135861 nfixa-001 protein_coding Danio_rerio 0 536
ENSDART00000090237 nfia-202 protein_coding Danio_rerio 0 433
ENSDART00000063467 nfia-201 protein_coding Danio_rerio 0 433
ENSDART00000090242 nfia-203 protein_coding Danio_rerio 0 433
ENSDART00000138233 nfia-001 protein_coding Danio_rerio 0 433
ENSDART00000138382 nfia-002 protein_coding Danio_rerio 0 416
ENST00000341919 NFIC-004 protein_coding Homo_sapiens 0 1655
ENST00000358552 NFIX-201 protein_coding Homo_sapiens 0 497
ENST00000360105 NFIX-003 protein_coding Homo_sapiens 0 497
ENST00000395111 NFIC-003 protein_coding Homo_sapiens 0 1657
ENST00000397661 NFIX-001 protein_coding Homo_sapiens 0 521
ENST00000443272 NFIC-006 protein_coding Homo_sapiens 0 1629
ENST00000585382 NFIX-009 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000585575 NFIX-006 protein_coding Homo_sapiens 0 499
ENST00000586797 NFIX-005 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000586873 NFIX-011 protein_coding Homo_sapiens 0 486
ENST00000586919 NFIC-011 protein_coding Homo_sapiens 0 859
ENST00000587260 NFIX-007 protein_coding Homo_sapiens 0 503
ENST00000587760 NFIX-002 protein_coding Homo_sapiens 0 499
ENST00000588228 NFIX-004 protein_coding Homo_sapiens 0 497
ENST00000589123 NFIC-001 protein_coding Homo_sapiens 0 1565
ENST00000589164 NFIC-009 processed_transcript Homo_sapiens 2e-17 94
ENST00000589537 NFIC-010 retained_intron Homo_sapiens 0 549
ENST00000590027 NFIX-008 protein_coding Homo_sapiens 0 492
ENST00000590282 NFIC-005 protein_coding Homo_sapiens 0 1725
ENST00000591028 NFIX-010 protein_coding Homo_sapiens 0 486
ENST00000592199 NFIX-013 protein_coding Homo_sapiens 0 521

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