C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoplasmin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056209 Npm3 10090 - 19:45747734-45749591 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070215 Npm3-001 45747734-45749591 protein_coding
  ENSMUST00000144165 Npm3-002 45748543-45749549 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070215ENSMUST00000144165
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070215 20.265±8.63 24.466±5.28 31.118±2.64 25.280±10.57 28.407±6.99 11.812±0.78 18.327±1.33 34.948±24.55 20.384±2.08 12.958±1.56 31.514±3.87 49.436±6.87 90.216±8.43
ENSMUST00000144165 N/A 5.437±0.97 N/A N/A N/A N/A N/A N/A N/A N/A 6.650±0.00 N/A 41.517±5.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089J CIL_00089J_0002 VISTA 19:45175437-45776961
CIL_000942 CIL_000942_0002 VISTA 19:45193585-45794869
CIL_00099F CIL_00099F_0002 VISTA 19:45434459-46035623
CIL_00099E CIL_00099E_0002 VISTA 19:45446900-46047683
CIL_0005NC CIL_0005NC_0002 CGP 19:45736798-45749591
CIL_0005NB CIL_0005NB_0002 CGP 19:45747734-45783520

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0006364 IDA rRNA processing
GO:0009303 IDA rRNA transcription
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000107833 NPM3 nucleophosmin/nucleoplasmin 3 protein_coding Homo_sapiens

Loading