C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleophosmin/nucleoplasmin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107833 NPM3 9606 - 10:101781325-101783413 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370110 NPM3-001 101781325-101783413 protein_coding
  ENST00000462391 NPM3-004 101781589-101783375 processed_transcript
  ENST00000468544 NPM3-003 101781727-101782648 processed_transcript
  ENST00000474993 NPM3-002 101781332-101783384 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370110ENST00000462391ENST00000468544ENST00000474993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370110 1.538±0.00 2.032±0.00 N/A 3.282±0.00 2.407±0.60 2.221±0.00 1.105±0.72 1.554±0.00 1.344±0.43 1.219±0.02 N/A 22.388±7.55 15.804±4.99 5.796±3.81
ENST00000462391 7.279±0.00 5.549±0.00 N/A 3.384±0.00 4.465±0.00 7.948±0.00 0.261±0.00 9.173±0.00 1.796±0.00 4.917±0.00 N/A N/A N/A 16.684±0.00
ENST00000468544 5.110±0.00 12.860±0.00 0.576±0.00 4.774±0.00 3.380±0.00 5.774±0.00 1.107±0.00 5.837±2.65 4.126±0.05 12.336±0.00 3.938±3.19 16.673±12.24 10.074±2.49 10.657±2.26
ENST00000474993 N/A N/A 0.593±0.00 1.163±0.17 1.330±0.00 1.685±0.00 N/A 1.060±0.46 N/A 2.193±0.00 1.097±0.44 11.017±0.00 4.717±0.00 6.207±2.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089J CIL_00089J_0001 VISTA 10:101185253-101786853
CIL_000942 CIL_000942_0001 VISTA 10:101206892-101808215
CIL_00099F CIL_00099F_0001 VISTA 10:101467436-102068636
CIL_00099E CIL_00099E_0001 VISTA 10:101480423-102081273
CIL_0005NC CIL_0005NC_0001 CGP 10:101770130-101783413
CIL_0005NB CIL_0005NB_0001 CGP 10:101781325-101818465

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005730 IEA nucleolus
GO:0006364 IEA rRNA processing
GO:0009303 IEA rRNA transcription
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000056209 Npm3 nucleoplasmin 3 protein_coding Mus_musculus

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