C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoplasmin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070215 Npm3-001 ENSMUSG00000056209 10090 - 19:45747734-45749591 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070215
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070215 20.265±8.63 24.466±5.28 31.118±2.64 25.280±10.57 28.407±6.99 11.812±0.78 18.327±1.33 34.948±24.55 20.384±2.08 12.958±1.56 31.514±3.87 49.436±6.87 90.216±8.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089J CIL_00089J_0002 VISTA 19:45175437-45776961
CIL_000942 CIL_000942_0002 VISTA 19:45193585-45794869
CIL_00099F CIL_00099F_0002 VISTA 19:45434459-46035623
CIL_00099E CIL_00099E_0002 VISTA 19:45446900-46047683
CIL_0005NC CIL_0005NC_0002 CGP 19:45736798-45749591
CIL_0005NB CIL_0005NB_0002 CGP 19:45747734-45783520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0006364 IDA rRNA processing
GO:0009303 IDA rRNA transcription
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370110 NPM3-001 protein_coding Homo_sapiens 0 494
ENST00000462391 NPM3-004 processed_transcript Homo_sapiens 0 339

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