C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056310 Tyw1 10090 + 5:130255619-130341563 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040213 Tyw1-001 130257035-130341563 protein_coding
  ENSMUST00000044204 Tyw1-201 130255619-130285386 protein_coding
  ENSMUST00000100662 Tyw1-003 130257035-130277749 protein_coding
  ENSMUST00000147619 Tyw1-004 130258930-130269391 protein_coding
  ENSMUST00000173375 Tyw1-002 130255619-130285386 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040213ENSMUST00000173375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040213 7.294±0.10 5.096±1.42 5.332±2.22 6.066±1.75 4.878±1.57 5.988±0.92 1.769±0.41 6.301±0.68 4.254±0.94 4.095±0.75 3.098±0.46 8.863±1.62 6.453±3.08 4.573±0.84
ENSMUST00000173375 N/A N/A N/A N/A 0.424±0.04 N/A N/A N/A N/A N/A N/A N/A N/A 0.490±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005US CIL_0005US_0002 CGP 5:130245731-130341563

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process
GO:0010181 IEA FMN binding
GO:0016491 IEA oxidoreductase activity
GO:0016829 IEA lyase activity
GO:0051539 IEA 4 iron, 4 sulfur cluster binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062987 tyw1 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000198874 TYW1 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) protein_coding Homo_sapiens
ENSG00000277149 TYW1B tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae) protein_coding Homo_sapiens

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