C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005US_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000126524-ENSG00000198874 CGP 9606 7:66987677-67239519
GeneTranscriptPositionBiotype
ENSG00000126524 (SBDS)
Shwachman-Bodian-Diamond syndrome 		ENST00000246868 (SBDS-001) 66987677-66995601 protein_coding
ENST00000414306 (SBDS-005) 66987744-66995576 nonsense_mediated_decay
ENST00000463579 (SBDS-007) 66991137-66994366 retained_intron
ENST00000490953 (SBDS-004) 66991061-66995566 retained_intron
ENST00000617799 (SBDS-201) 66988341-66995587 protein_coding
ENSG00000198874 (TYW1)
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) 		ENST00000359626 (TYW1-001) 66996815-67239514 protein_coding
ENST00000361660 (TYW1-002) 66996853-67239512 nonsense_mediated_decay
ENST00000442959 (TYW1-010) 66996820-67017881 protein_coding
ENST00000475392 (TYW1-011) 66996845-67009749 retained_intron
ENST00000491969 (TYW1-009) 66995173-66998855 processed_transcript
ENST00000495971 (TYW1-007) 67067138-67238640 retained_intron
ENST00000615572 (TYW1-201) 66996820-67239519 protein_coding
ENSG00000233383 (RP11-324F21.1)
 ENST00000457546 (RP11-324F21.1-001) 67089257-67089470 processed_pseudogene
CIL_0005US_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025337-ENSMUSG00000056310 CGP 10090 5:130245731-130341563
GeneTranscriptPositionBiotype
ENSMUSG00000025337 (Sbds)
Shwachman-Bodian-Diamond syndrome homolog (human) 		ENSMUST00000026387 (Sbds-001) 130245731-130255530 protein_coding
ENSMUST00000125625 (Sbds-003) 130247884-130254085 protein_coding
ENSMUST00000139211 (Sbds-002) 130246405-130255405 nonsense_mediated_decay
ENSMUSG00000056310 (Tyw1)
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) 		ENSMUST00000040213 (Tyw1-001) 130257035-130341563 protein_coding
ENSMUST00000044204 (Tyw1-201) 130255619-130285386 protein_coding
ENSMUST00000100662 (Tyw1-003) 130257035-130277749 protein_coding
ENSMUST00000147619 (Tyw1-004) 130258930-130269391 protein_coding
ENSMUST00000173375 (Tyw1-002) 130255619-130285386 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005US_0001ENSG00000126524ENST00000246868ENST00000414306ENST00000463579ENST00000490953ENST00000617799ENSG00000198874ENST00000359626ENST00000361660ENST00000442959ENST00000475392ENST00000491969ENST00000495971ENST00000615572ENSG00000233383ENST00000457546CIL_0005US_0002ENSMUSG00000025337ENSMUST00000026387ENSMUST00000125625ENSMUST00000139211ENSMUSG00000056310ENSMUST00000040213ENSMUST00000044204ENSMUST00000100662ENSMUST00000147619ENSMUST00000173375
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005US_0001ENSG00000126524ENST00000246868ENST00000414306ENST00000490953ENST00000617799ENSG00000198874ENST00000359626ENSG00000233383ENST00000457546CIL_0005US_0002ENSMUSG00000025337ENSMUST00000026387ENSMUST00000125625ENSMUST00000139211ENSMUSG00000056310ENSMUST00000040213ENSMUST00000173375
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126524 ENST00000246868 47.410±0.00 37.887±0.00 3.096±0.00 39.129±15.56 39.760±27.71 33.149±18.63 22.826±10.52 26.838±14.47 18.054±3.85 21.024±10.09 32.034±12.26 44.709±20.94 44.816±11.76 37.610±18.28
ENST00000414306 N/A 16.587±0.00 N/A 40.829±0.00 12.477±0.00 17.832±0.00 32.550±0.00 16.229±0.00 15.043±0.00 58.388±0.00 29.073±0.00 39.323±0.00 11.562±0.00 N/A
ENST00000463579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.324±0.00
ENST00000617799 N/A N/A N/A N/A 9.024±0.00 5.238±0.00 N/A N/A N/A N/A N/A 35.510±0.00 12.307±0.00 15.735±0.00
ENSG00000198874 ENST00000359626 N/A N/A N/A N/A 2.112±0.00 2.486±0.00 N/A N/A 1.950±0.00 1.448±0.00 N/A 2.183±0.00 3.355±0.00 4.278±0.00
ENST00000361660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233383 ENST00000457546 N/A N/A N/A N/A N/A 5.837±0.00 N/A N/A N/A N/A N/A 0.981±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025337 ENSMUST00000026387 14.755±4.10 16.894±8.89 30.971±2.72 16.418±7.03 7.949±1.61 23.446±2.17 8.444±1.10 15.766±3.84 18.671±8.37 19.939±2.91 10.489±1.24 13.623±11.60 27.884±11.87 30.024±8.03
ENSMUST00000125625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.127±0.00 N/A N/A
ENSMUST00000139211 N/A N/A N/A 42.611±0.00 7.039±0.00 N/A N/A N/A N/A N/A N/A 25.106±13.84 50.618±8.36 62.055±0.00
ENSMUSG00000056310 ENSMUST00000040213 7.294±0.10 5.096±1.42 5.332±2.22 6.066±1.75 4.878±1.57 5.988±0.92 1.769±0.41 6.301±0.68 4.254±0.94 4.095±0.75 3.098±0.46 8.863±1.62 6.453±3.08 4.573±0.84
ENSMUST00000044204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000100662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173375 N/A N/A N/A N/A 0.424±0.04 N/A N/A N/A N/A N/A N/A N/A N/A 0.490±0.00

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