C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040213 Tyw1-001 ENSMUSG00000056310 10090 + 5:130257035-130341563 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040213 7.294±0.10 5.096±1.42 5.332±2.22 6.066±1.75 4.878±1.57 5.988±0.92 1.769±0.41 6.301±0.68 4.254±0.94 4.095±0.75 3.098±0.46 8.863±1.62 6.453±3.08 4.573±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005US CIL_0005US_0002 CGP 5:130245731-130341563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process
GO:0010181 IEA FMN binding
GO:0016491 IEA oxidoreductase activity
GO:0016829 IEA lyase activity
GO:0051539 IEA 4 iron, 4 sulfur cluster binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359626 TYW1-001 protein_coding Homo_sapiens 0 1670
ENST00000361660 TYW1-002 nonsense_mediated_decay Homo_sapiens 0 1031
ENST00000495971 TYW1-007 retained_intron Homo_sapiens 0 1029
ENST00000615572 TYW1-201 protein_coding Homo_sapiens 0 1024

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