C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: surfactant associated protein B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182014 Sftpb-001 ENSMUSG00000056370 10090 + 6:72304620-72314367 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000182014
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182014 0.040±0.00 0.070±0.00 0.071±0.00 0.147±0.09 0.078±0.04 1.020±0.01 0.049±0.02 1131.473±170.87 0.267±0.06 0.306±0.14 0.078±0.00 0.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0002 VISTA 6:71915186-72518828
CIL_00084P CIL_00084P_0002 VISTA 6:71915200-72518764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005764 IEA lysosome
GO:0006665 IEA sphingolipid metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393822 SFTPB-201 protein_coding Homo_sapiens 0 699
ENST00000409383 SFTPB-003 protein_coding Homo_sapiens 0 699
ENST00000428225 SFTPB-002 protein_coding Homo_sapiens 0 649
ENST00000519937 SFTPB-001 protein_coding Homo_sapiens 0 699

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