C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: surfactant associated protein B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183278 Sftpb-002 ENSMUSG00000056370 10090 + 6:72304625-72312932 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENSMUST00000183278
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000183278 0.197±0.16 0.241±0.18 0.061±0.00 0.345±0.17 0.059±0.03 3.086±0.51 0.090±0.03 2597.342±843.06 0.318±0.00 0.252±0.10 0.116±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0002 VISTA 6:71915186-72518828
CIL_00084P CIL_00084P_0002 VISTA 6:71915200-72518764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005764 IEA lysosome
GO:0006665 IEA sphingolipid metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393822 SFTPB-201 protein_coding Homo_sapiens 0 693
ENST00000409383 SFTPB-003 protein_coding Homo_sapiens 0 693
ENST00000428225 SFTPB-002 protein_coding Homo_sapiens 0 649
ENST00000519937 SFTPB-001 protein_coding Homo_sapiens 0 693

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