C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA A830018L16 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057715 A830018L16Rik 10090 + 1:11414105-11975901 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048613 A830018L16Rik-001 11414105-11975901 protein_coding
  ENSMUST00000135014 A830018L16Rik-003 11414269-11601621 protein_coding
  ENSMUST00000137824 A830018L16Rik-002 11414509-11975397 protein_coding
  ENSMUST00000141339 A830018L16Rik-007 11518671-11599993 protein_coding
  ENSMUST00000141512 A830018L16Rik-005 11414112-11933740 nonsense_mediated_decay
  ENSMUST00000142117 A830018L16Rik-004 11414112-11537707 processed_transcript
  ENSMUST00000150870 A830018L16Rik-006 11414112-11518709 processed_transcript
  ENSMUST00000171690 A830018L16Rik-201 11414105-11601811 protein_coding
  ENSMUST00000179089 A830018L16Rik-009 11414509-11975397 protein_coding
  ENSMUST00000185882 A830018L16Rik-008 11414509-11975397 protein_coding
  ENSMUST00000191437 A830018L16Rik-010 11579306-11596631 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048613ENSMUST00000135014ENSMUST00000137824ENSMUST00000141339ENSMUST00000141512ENSMUST00000142117ENSMUST00000150870ENSMUST00000171690ENSMUST00000179089ENSMUST00000191437
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048613 N/A N/A 0.021±0.00 0.311±0.01 N/A N/A N/A 0.042±0.00 0.003±0.00 0.124±0.00 0.016±0.00 0.413±0.00 N/A N/A
ENSMUST00000135014 0.178±0.01 N/A 0.027±0.01 0.758±0.68 0.192±0.00 0.092±0.00 0.020±0.00 0.016±0.00 0.009±0.00 0.177±0.00 N/A 0.035±0.00 0.006±0.00 N/A
ENSMUST00000137824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.167±0.00 0.032±0.00 0.098±0.04
ENSMUST00000141339 N/A N/A N/A N/A 0.218±0.00 0.075±0.00 0.025±0.00 0.074±0.01 0.002±0.00 N/A 0.005±0.00 0.212±0.10 0.005±0.00 0.041±0.03
ENSMUST00000141512 0.244±0.00 N/A 0.046±0.00 N/A 0.276±0.00 0.039±0.00 0.094±0.00 0.098±0.00 N/A 0.301±0.03 N/A N/A N/A 0.060±0.02
ENSMUST00000142117 N/A N/A 0.044±0.00 N/A N/A 0.096±0.03 0.051±0.04 N/A 0.011±0.01 N/A 0.043±0.03 0.154±0.10 0.058±0.05 0.060±0.03
ENSMUST00000150870 1.216±0.28 1.601±0.74 N/A N/A 1.182±0.49 0.158±0.09 0.214±0.11 0.248±0.17 0.013±0.01 0.930±0.26 N/A 0.962±0.47 N/A N/A
ENSMUST00000171690 N/A 0.175±0.00 N/A 0.336±0.00 0.156±0.01 0.036±0.00 0.013±0.00 0.062±0.00 0.005±0.00 0.216±0.08 0.009±0.00 0.151±0.09 0.007±0.00 0.010±0.01
ENSMUST00000179089 N/A N/A 0.040±0.00 N/A N/A N/A 0.048±0.01 0.052±0.00 0.009±0.01 N/A N/A 0.141±0.05 0.026±0.00 0.058±0.02
ENSMUST00000191437 N/A N/A N/A N/A 0.927±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SD CIL_0001SD_0003 CGP 1:10993465-11975901
CIL_0001SG CIL_0001SG_0003 CGP 1:11414105-12861192

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000095034 C24H8orf34 chromosome 8 open reading frame 34 protein_coding Danio_rerio
ENSG00000165084 C8orf34 chromosome 8 open reading frame 34 protein_coding Homo_sapiens

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