C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001SD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000071692-ENSDARG00000095034 CGP 7955 24:19498092-19938011
GeneTranscriptPositionBiotype
ENSDARG00000071692 (PREX2)
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 		ENSDART00000106186 (PREX2-001) 19498092-19756483 protein_coding
ENSDARG00000086713 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000125294 (5S_rRNA.1536-201) 19838081-19838195 rRNA
ENSDARG00000095034 (C24H8orf34)
chromosome 8 open reading frame 34 		ENSDART00000139299 (C24H8orf34-001) 19759575-19938011 protein_coding
CIL_0001SD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000046889-ENSG00000165084 CGP 9606 8:67952118-68819022
GeneTranscriptPositionBiotype
ENSG00000046889 (PREX2)
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 		ENST00000288368 (PREX2-001) 67952118-68237030 protein_coding
ENST00000517617 (PREX2-003) 67952489-68111089 processed_transcript
ENST00000520235 (PREX2-004) 68157407-68220350 processed_transcript
ENST00000522247 (PREX2-005) 68157375-68192630 processed_transcript
ENST00000529398 (PREX2-002) 67952368-68106007 processed_transcript
ENSG00000165084 (C8orf34)
chromosome 8 open reading frame 34 		ENST00000325233 (C8orf34-004) 68625459-68792571 protein_coding
ENST00000337103 (C8orf34-002) 68437913-68819022 protein_coding
ENST00000348340 (C8orf34-003) 68331225-68535827 protein_coding
ENST00000349492 (C8orf34-008) 68331142-68521939 processed_transcript
ENST00000518515 (C8orf34-007) 68533020-68787613 processed_transcript
ENST00000518698 (C8orf34-001) 68330722-68818561 protein_coding
ENST00000521406 (C8orf34-006) 68439476-68818274 nonsense_mediated_decay
ENST00000523686 (C8orf34-005) 68331222-68448010 protein_coding
ENSG00000236191 (RPS15AP25)
ribosomal protein S15a pseudogene 25 		ENST00000489168 (RPS15AP25-001) 68525517-68525906 processed_pseudogene
ENSG00000248801 (RP11-664D7.4)
 ENST00000512294 (RP11-664D7.4-001) 68303468-68331491 antisense
ENST00000584858 (RP11-664D7.4-004) 68304632-68312217 antisense
ENSG00000252210 (Y_RNA)
Y RNA 		ENST00000516401 (Y_RNA.1-881) 68223318-68223402 misc_RNA
ENSG00000253964 (RPL31P40)
ribosomal protein L31 pseudogene 40 		ENST00000520506 (RPL31P40-001) 68293446-68293818 processed_pseudogene
ENSG00000254051 (RP11-403D15.1)
 ENST00000518911 (RP11-403D15.1-001) 68176768-68177221 processed_pseudogene
ENSG00000255206 (RP11-403D15.2)
 ENST00000526901 (RP11-403D15.2-001) 68082204-68095081 antisense
CIL_0001SD_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048960-ENSMUSG00000057715 CGP 10090 1:10993465-11975901
GeneTranscriptPositionBiotype
ENSMUSG00000048960 (Prex2)
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 		ENSMUST00000027056 (Prex2-001) 10993465-11303681 protein_coding
ENSMUST00000187694 (Prex2-004) 11140691-11160596 retained_intron
ENSMUST00000187745 (Prex2-008) 11258106-11298005 nonsense_mediated_decay
ENSMUST00000188154 (Prex2-006) 11283993-11298204 nonsense_mediated_decay
ENSMUST00000188189 (Prex2-007) 11258067-11297898 nonsense_mediated_decay
ENSMUST00000189385 (Prex2-005) 11263963-11299594 nonsense_mediated_decay
ENSMUST00000189822 (Prex2-003) 11098530-11150071 retained_intron
ENSMUST00000190935 (Prex2-002) 10993518-10996601 retained_intron
ENSMUSG00000057715 (A830018L16Rik)
RIKEN cDNA A830018L16 gene 		ENSMUST00000048613 (A830018L16Rik-001) 11414105-11975901 protein_coding
ENSMUST00000135014 (A830018L16Rik-003) 11414269-11601621 protein_coding
ENSMUST00000137824 (A830018L16Rik-002) 11414509-11975397 protein_coding
ENSMUST00000141339 (A830018L16Rik-007) 11518671-11599993 protein_coding
ENSMUST00000141512 (A830018L16Rik-005) 11414112-11933740 nonsense_mediated_decay
ENSMUST00000142117 (A830018L16Rik-004) 11414112-11537707 processed_transcript
ENSMUST00000150870 (A830018L16Rik-006) 11414112-11518709 processed_transcript
ENSMUST00000171690 (A830018L16Rik-201) 11414105-11601811 protein_coding
ENSMUST00000179089 (A830018L16Rik-009) 11414509-11975397 protein_coding
ENSMUST00000185882 (A830018L16Rik-008) 11414509-11975397 protein_coding
ENSMUST00000191437 (A830018L16Rik-010) 11579306-11596631 processed_transcript
ENSMUSG00000099845 (RP24-467J24.2)
predicted gene 29273 		ENSMUST00000188880 (RP24-467J24.2-001) 11608139-11608400 processed_pseudogene
ENSMUSG00000101827 (RP24-427A3.1)
predicted gene 28686 		ENSMUST00000187404 (RP24-427A3.1-001) 11223566-11224174 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SD_0001ENSDARG00000071692ENSDART00000106186ENSDARG00000086713ENSDART00000125294ENSDARG00000095034ENSDART00000139299CIL_0001SD_0002ENSG00000046889ENST00000288368ENST00000517617ENST00000520235ENST00000522247ENST00000529398ENSG00000165084ENST00000325233ENST00000337103ENST00000348340ENST00000349492ENST00000518515ENST00000518698ENST00000521406ENST00000523686ENSG00000236191ENST00000489168ENSG00000248801ENST00000512294ENST00000584858ENSG00000252210ENST00000516401ENSG00000253964ENST00000520506ENSG00000254051ENST00000518911ENSG00000255206ENST00000526901CIL_0001SD_0003ENSMUSG00000048960ENSMUST00000027056ENSMUST00000187694ENSMUST00000187745ENSMUST00000188154ENSMUST00000188189ENSMUST00000189385ENSMUST00000189822ENSMUST00000190935ENSMUSG00000057715ENSMUST00000048613ENSMUST00000135014ENSMUST00000137824ENSMUST00000141339ENSMUST00000141512ENSMUST00000142117ENSMUST00000150870ENSMUST00000171690ENSMUST00000179089ENSMUST00000185882ENSMUST00000191437ENSMUSG00000099845ENSMUST00000188880ENSMUSG00000101827ENSMUST00000187404
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SD_0001ENSDARG00000071692ENSDART00000106186ENSDARG00000086713ENSDART00000125294ENSDARG00000095034ENSDART00000139299CIL_0001SD_0002ENSG00000046889ENST00000288368ENST00000517617ENST00000529398ENSG00000165084ENST00000325233ENST00000337103ENST00000348340ENST00000349492ENST00000518698ENST00000521406ENST00000523686ENSG00000236191ENST00000489168ENSG00000248801ENST00000512294ENSG00000252210ENST00000516401ENSG00000253964ENST00000520506ENSG00000254051ENST00000518911ENSG00000255206ENST00000526901CIL_0001SD_0003ENSMUSG00000048960ENSMUST00000027056ENSMUST00000187694ENSMUST00000188189ENSMUST00000189822ENSMUSG00000057715ENSMUST00000048613ENSMUST00000135014ENSMUST00000137824ENSMUST00000141339ENSMUST00000141512ENSMUST00000142117ENSMUST00000150870ENSMUST00000171690ENSMUST00000179089ENSMUST00000191437ENSMUSG00000099845ENSMUST00000188880ENSMUSG00000101827ENSMUST00000187404
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000071692 ENSDART00000106186 N/A N/A N/A 3.805±2.55 N/A N/A 4.756±1.61 0.723±0.00 0.137±0.00 N/A 3.276±0.00 N/A N/A N/A
ENSDARG00000086713 ENSDART00000125294 N/A N/A N/A 85.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000095034 ENSDART00000139299 N/A N/A N/A 1.912±1.82 N/A N/A 0.028±0.01 0.185±0.00 0.029±0.00 N/A 0.465±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000046889 ENST00000288368 3.133±0.00 0.773±0.00 0.183±0.00 2.676±0.15 3.204±0.00 1.373±0.58 1.419±0.55 0.585±0.48 1.472±1.13 1.368±0.22 0.292±0.19 0.427±0.16 1.210±0.24 1.275±0.83
ENST00000517617 N/A N/A N/A N/A N/A N/A 0.577±0.00 0.184±0.00 N/A 1.046±0.00 N/A N/A N/A N/A
ENST00000520235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529398 N/A N/A 0.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00 N/A N/A
ENSG00000165084 ENST00000325233 0.061±0.00 0.244±0.00 N/A N/A N/A 0.033±0.00 0.048±0.00 0.124±0.00 0.004±0.00 N/A 0.031±0.00 0.046±0.02 0.038±0.00 0.147±0.04
ENST00000337103 N/A N/A N/A N/A N/A 0.030±0.00 0.019±0.00 N/A N/A N/A N/A 0.061±0.05 N/A N/A
ENST00000348340 0.043±0.00 N/A 0.057±0.00 1.031±0.52 0.251±0.00 N/A 0.085±0.05 0.020±0.00 0.190±0.00 0.468±0.19 N/A 0.089±0.00 N/A 0.048±0.01
ENST00000349492 N/A N/A 0.168±0.00 N/A N/A 0.318±0.00 N/A N/A N/A N/A N/A 0.152±0.02 N/A N/A
ENST00000518515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518698 N/A 0.118±0.00 N/A 0.740±0.15 0.857±0.79 0.048±0.00 N/A N/A N/A 1.571±0.17 N/A 0.459±0.46 0.030±0.01 0.060±0.00
ENST00000521406 0.103±0.00 N/A N/A 1.208±0.00 N/A 0.094±0.00 N/A N/A N/A N/A N/A 0.419±0.44 N/A N/A
ENST00000523686 N/A N/A 0.115±0.00 N/A N/A N/A N/A N/A 0.084±0.08 N/A N/A N/A N/A N/A
ENSG00000236191 ENST00000489168 0.067±0.00 N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A 0.030±0.00 N/A N/A 0.031±0.00
ENSG00000248801 ENST00000512294 0.064±0.00 0.255±0.00 N/A 0.855±0.00 0.428±0.00 0.070±0.00 0.119±0.00 0.036±0.00 0.025±0.00 1.592±0.00 N/A 0.196±0.15 N/A 0.204±0.00
ENST00000584858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252210 ENST00000516401 N/A N/A N/A 2.422±0.00 0.777±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253964 ENST00000520506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00
ENSG00000254051 ENST00000518911 N/A N/A N/A 0.537±0.00 N/A N/A N/A N/A N/A 0.531±0.00 N/A 0.087±0.00 N/A N/A
ENSG00000255206 ENST00000526901 0.045±0.00 N/A N/A 0.060±0.00 0.427±0.00 0.063±0.00 0.247±0.22 N/A N/A 1.812±0.00 0.074±0.00 N/A N/A 0.585±0.23
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000048960 ENSMUST00000027056 4.083±1.18 0.912±0.39 3.547±0.28 1.001±0.68 2.085±0.26 0.839±0.21 2.089±0.62 1.742±0.48 0.372±0.12 23.845±1.81 0.259±0.06 0.835±0.28 2.331±1.14 0.079±0.03
ENSMUST00000187694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00
ENSMUST00000187745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188189 N/A 3.733±0.20 N/A N/A 4.221±0.50 2.524±0.00 N/A 3.751±0.58 1.397±0.30 N/A N/A 4.602±1.18 N/A 0.836±0.28
ENSMUST00000189385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.182±0.00
ENSMUST00000190935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057715 ENSMUST00000048613 N/A N/A 0.021±0.00 0.311±0.01 N/A N/A N/A 0.042±0.00 0.003±0.00 0.124±0.00 0.016±0.00 0.413±0.00 N/A N/A
ENSMUST00000135014 0.178±0.01 N/A 0.027±0.01 0.758±0.68 0.192±0.00 0.092±0.00 0.020±0.00 0.016±0.00 0.009±0.00 0.177±0.00 N/A 0.035±0.00 0.006±0.00 N/A
ENSMUST00000137824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.167±0.00 0.032±0.00 0.098±0.04
ENSMUST00000141339 N/A N/A N/A N/A 0.218±0.00 0.075±0.00 0.025±0.00 0.074±0.01 0.002±0.00 N/A 0.005±0.00 0.212±0.10 0.005±0.00 0.041±0.03
ENSMUST00000141512 0.244±0.00 N/A 0.046±0.00 N/A 0.276±0.00 0.039±0.00 0.094±0.00 0.098±0.00 N/A 0.301±0.03 N/A N/A N/A 0.060±0.02
ENSMUST00000142117 N/A N/A 0.044±0.00 N/A N/A 0.096±0.03 0.051±0.04 N/A 0.011±0.01 N/A 0.043±0.03 0.154±0.10 0.058±0.05 0.060±0.03
ENSMUST00000150870 1.216±0.28 1.601±0.74 N/A N/A 1.182±0.49 0.158±0.09 0.214±0.11 0.248±0.17 0.013±0.01 0.930±0.26 N/A 0.962±0.47 N/A N/A
ENSMUST00000171690 N/A 0.175±0.00 N/A 0.336±0.00 0.156±0.01 0.036±0.00 0.013±0.00 0.062±0.00 0.005±0.00 0.216±0.08 0.009±0.00 0.151±0.09 0.007±0.00 0.010±0.01
ENSMUST00000179089 N/A N/A 0.040±0.00 N/A N/A N/A 0.048±0.01 0.052±0.00 0.009±0.01 N/A N/A 0.141±0.05 0.026±0.00 0.058±0.02
ENSMUST00000185882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191437 N/A N/A N/A N/A 0.927±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099845 ENSMUST00000188880 N/A N/A N/A N/A 0.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000101827 ENSMUST00000187404 N/A N/A N/A 0.079±0.01 0.167±0.00 N/A N/A 0.067±0.00 0.201±0.00 0.613±0.20 N/A N/A 0.064±0.00 N/A

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