C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073448 Sema3b-201 ENSMUSG00000057969 10090 - 9:107598354-107606656 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastHeartKidneyLiverLungMusclePlacentaENSMUST00000073448
Transcript ID Adipose Adrenal Bladder Breast Heart Kidney Liver Lung Muscle Placenta
ENSMUST00000073448 1.582±0.08 1.380±0.00 3.161±0.00 3.803±1.40 2.458±0.00 6.039±0.66 0.232±0.12 6.233±1.47 1.584±0.90 1.350±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0002 VISTA 9:107005935-107609958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000418576 SEMA3B-007 protein_coding Homo_sapiens 0 1249
ENST00000419007 SEMA3B-008 retained_intron Homo_sapiens 0 315
ENST00000433753 SEMA3B-016 protein_coding Homo_sapiens 0 2180
ENST00000439487 SEMA3B-012 retained_intron Homo_sapiens 0 209
ENST00000441915 SEMA3B-004 retained_intron Homo_sapiens 0 1738
ENST00000456210 SEMA3B-006 processed_transcript Homo_sapiens 0 355
ENST00000456560 SEMA3B-005 protein_coding Homo_sapiens 0 1389
ENST00000611067 SEMA3B-009 protein_coding Homo_sapiens 0 2056
ENST00000611418 SEMA3B-201 protein_coding Homo_sapiens 0 2163
ENST00000612509 SEMA3B-011 retained_intron Homo_sapiens 0 361
ENST00000616701 SEMA3B-001 protein_coding Homo_sapiens 0 2202
ENST00000618865 SEMA3B-202 protein_coding Homo_sapiens 0 2202
ENST00000619119 SEMA3B-002 retained_intron Homo_sapiens 0 1168
ENST00000621029 SEMA3B-010 protein_coding Homo_sapiens 0 782

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