C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123926 Sema3b-004 ENSMUSG00000057969 10090 - 9:107597674-107605521 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryENSMUST00000123926
Transcript ID Brain Muscle Ovary
ENSMUST00000123926 0.376±0.23 0.544±0.15 0.876±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0002 VISTA 9:107005935-107609958

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000418576 SEMA3B-007 protein_coding Homo_sapiens 0 673
ENST00000419007 SEMA3B-008 retained_intron Homo_sapiens 0 315
ENST00000433753 SEMA3B-016 protein_coding Homo_sapiens 0 1585
ENST00000439487 SEMA3B-012 retained_intron Homo_sapiens 0 209
ENST00000441915 SEMA3B-004 retained_intron Homo_sapiens 0 1144
ENST00000456210 SEMA3B-006 processed_transcript Homo_sapiens 0 359
ENST00000456560 SEMA3B-005 protein_coding Homo_sapiens 0 795
ENST00000611067 SEMA3B-009 protein_coding Homo_sapiens 0 1487
ENST00000611418 SEMA3B-201 protein_coding Homo_sapiens 0 1568
ENST00000612509 SEMA3B-011 retained_intron Homo_sapiens 0 361
ENST00000616701 SEMA3B-001 protein_coding Homo_sapiens 0 1609
ENST00000618865 SEMA3B-202 protein_coding Homo_sapiens 0 1609
ENST00000619119 SEMA3B-002 retained_intron Homo_sapiens 0 1016
ENST00000621029 SEMA3B-010 protein_coding Homo_sapiens 0 782

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