C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121820 Spock2-001 ENSMUSG00000058297 10090 + 10:60106219-60135198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121820
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121820 12.362±9.99 9.648±0.56 8.165±0.92 64.880±28.58 2.361±0.55 2.472±0.48 3.344±0.47 0.793±0.22 0.112±0.04 69.270±2.18 1.042±0.29 25.124±7.25 0.622±0.76 21.608±9.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VS CIL_0007VS_0002 VISTA 10:59667734-60271225

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 ISS calcium ion binding
GO:0005539 IDA glycosaminoglycan binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007165 IEA signal transduction
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0019800 IDA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030198 IDA extracellular matrix organization
GO:0050840 IDA extracellular matrix binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000132027 spock2-001 protein_coding Danio_rerio 0 442
ENSDART00000110061 spock2-201 protein_coding Danio_rerio 0 429
ENST00000317376 SPOCK2-201 protein_coding Homo_sapiens 0 1923
ENST00000373109 SPOCK2-004 protein_coding Homo_sapiens 0 1923
ENST00000412663 SPOCK2-202 protein_coding Homo_sapiens 0 582
ENST00000460053 SPOCK2-006 processed_transcript Homo_sapiens 0 824
ENST00000463279 SPOCK2-002 processed_transcript Homo_sapiens 0 952
ENST00000469121 SPOCK2-001 processed_transcript Homo_sapiens 0 878
ENST00000495888 SPOCK2-005 processed_transcript Homo_sapiens 0 496
ENST00000536168 SPOCK2-203 protein_coding Homo_sapiens 0 1829

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