C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXV, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058897 Col25a1 10090 + 3:130180891-130599877 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000080335 Col25a1-002 130180891-130595132 protein_coding
  ENSMUST00000106353 Col25a1-001 130180891-130599877 protein_coding
  ENSMUST00000143830 Col25a1-003 130180891-130551024 retained_intron
  ENSMUST00000183368 Col25a1-004 130180891-130596321 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080335ENSMUST00000106353ENSMUST00000143830ENSMUST00000183368
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080335 N/A N/A N/A 5.300±0.00 N/A 0.083±0.06 0.037±0.01 N/A 0.020±0.01 N/A N/A N/A 1.089±0.61 0.125±0.00
ENSMUST00000106353 0.017±0.01 0.246±0.05 9.403±0.00 N/A 0.063±0.02 0.081±0.05 0.065±0.01 0.027±0.01 0.036±0.01 0.042±0.01 0.024±0.01 0.285±0.16 0.044±0.01 0.010±0.00
ENSMUST00000143830 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000183368 0.009±0.00 N/A N/A 1.685±0.00 0.116±0.06 0.027±0.01 0.015±0.00 0.039±0.02 N/A 0.045±0.03 0.009±0.00 0.162±0.03 0.025±0.00 0.243±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PU CIL_0008PU_0002 VISTA 3:130139552-130741737
CIL_0000FE CIL_0000FE_0002 CGP 3:130180891-130635750

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001540 ISS beta-amyloid binding
GO:0005576 ISA extracellular region
GO:0005581 IEA collagen trimer
GO:0005615 ISS extracellular space
GO:0005887 ISA integral component of plasma membrane
GO:0008150 ND biological_process
GO:0008201 ISS heparin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068218 COL25A1 collagen, type XXV, alpha 1 protein_coding Danio_rerio
ENSG00000188517 COL25A1 collagen, type XXV, alpha 1 protein_coding Homo_sapiens

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