C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXV, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188517 COL25A1 9606 - 4:108810721-109302657 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000399126 COL25A1-002 108823876-109302643 protein_coding
  ENST00000399127 COL25A1-003 108823876-109302367 protein_coding
  ENST00000399132 COL25A1-001 108813699-109302643 protein_coding
  ENST00000494183 COL25A1-004 108810721-109302367 nonsense_mediated_decay
  ENST00000505377 COL25A1-006 108824174-108832692 retained_intron
  ENST00000505591 COL25A1-005 109301809-109302657 protein_coding
  ENST00000512961 COL25A1-007 108813699-108824219 protein_coding
  ENST00000610288 COL25A1-201 108810721-109050182 protein_coding
  ENST00000622134 COL25A1-202 108810721-109050182 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399126ENST00000399127ENST00000399132ENST00000494183ENST00000512961ENST00000610288ENST00000622134
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399126 N/A 0.209±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399127 0.249±0.00 N/A 0.064±0.00 0.056±0.05 0.361±0.00 0.212±0.00 0.139±0.00 N/A 0.343±0.00 0.043±0.03 3.591±2.62
ENST00000399132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.179±0.00
ENST00000494183 N/A 0.271±0.00 0.362±0.00 0.024±0.02 0.683±0.00 N/A N/A N/A 0.076±0.00 N/A 1.445±0.00
ENST00000512961 N/A N/A N/A N/A N/A 0.310±0.00 N/A N/A N/A 0.094±0.00 N/A
ENST00000610288 N/A N/A N/A 0.009±0.00 N/A 0.016±0.00 0.114±0.00 N/A N/A 0.041±0.02 N/A
ENST00000622134 N/A N/A N/A N/A N/A N/A N/A 0.170±0.00 N/A 0.031±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000872 CIL_000872_0001 VISTA 4:108310752-108912309
CIL_0008PU CIL_0008PU_0001 VISTA 4:108672054-109274138

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001540 IDA beta-amyloid binding
GO:0005576 IDA extracellular region
GO:0005581 IEA collagen trimer
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0008201 IDA heparin binding
GO:0016021 NAS integral component of membrane
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068218 COL25A1 collagen, type XXV, alpha 1 protein_coding Danio_rerio
ENSMUSG00000058897 Col25a1 collagen, type XXV, alpha 1 protein_coding Mus_musculus

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