C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXV, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183368 Col25a1-004 ENSMUSG00000058897 10090 + 3:130180891-130596321 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000183368
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000183368 0.009±0.00 1.685±0.00 0.116±0.06 0.027±0.01 0.015±0.00 0.039±0.02 0.045±0.03 0.009±0.00 0.162±0.03 0.025±0.00 0.243±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PU CIL_0008PU_0002 VISTA 3:130139552-130741737
CIL_0000FE CIL_0000FE_0002 CGP 3:130180891-130635750

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0005576 ISA extracellular region
GO:0005887 ISA integral component of plasma membrane
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399126 COL25A1-002 protein_coding Homo_sapiens 0 1836
ENST00000399127 COL25A1-003 protein_coding Homo_sapiens 0 1325
ENST00000399132 COL25A1-001 protein_coding Homo_sapiens 0 1836
ENST00000494183 COL25A1-004 nonsense_mediated_decay Homo_sapiens 0 1925
ENST00000505591 COL25A1-005 protein_coding Homo_sapiens 1.99993e-41 172
ENST00000610288 COL25A1-201 protein_coding Homo_sapiens 0 2222
ENST00000622134 COL25A1-202 protein_coding Homo_sapiens 0 1454

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