C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXV, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080335 Col25a1-002 ENSMUSG00000058897 10090 + 3:130180891-130595132 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverPlacentaTestisENSMUST00000080335
Transcript ID Brain Colon Heart Liver Placenta Testis
ENSMUST00000080335 5.300±0.00 0.083±0.06 0.037±0.01 0.020±0.01 1.089±0.61 0.125±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PU CIL_0008PU_0002 VISTA 3:130139552-130741737
CIL_0000FE CIL_0000FE_0002 CGP 3:130180891-130635750

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 ISS beta-amyloid binding
GO:0005576 ISA extracellular region
GO:0005581 IEA collagen trimer
GO:0005615 ISS extracellular space
GO:0005887 ISA integral component of plasma membrane
GO:0008150 ND biological_process
GO:0008201 ISS heparin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399126 COL25A1-002 protein_coding Homo_sapiens 0 2063
ENST00000399127 COL25A1-003 protein_coding Homo_sapiens 0 1325
ENST00000399132 COL25A1-001 protein_coding Homo_sapiens 0 2063
ENST00000494183 COL25A1-004 nonsense_mediated_decay Homo_sapiens 0 1002
ENST00000505591 COL25A1-005 protein_coding Homo_sapiens 1.99993e-41 172
ENST00000610288 COL25A1-201 protein_coding Homo_sapiens 0 1507
ENST00000622134 COL25A1-202 protein_coding Homo_sapiens 0 1681

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